Jatropha Genome Database

JcCB0139081.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0139081.10 + phase: 1 /partial
         (422 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268526013|gb|FM891269.1|FM891269 FM891269 Jatropha curcas emb...   345   2e-95
gi|268523173|gb|FM893939.1|FM893939 FM893939 Jatropha curcas emb...   266   2e-71

>gi|268526013|gb|FM891269.1|FM891269 FM891269 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_001404,
           mRNA sequence
          Length = 330

 Score =  345 bits (174), Expect = 2e-95
 Identities = 181/182 (99%), Gaps = 1/182 (0%)
 Strand = Plus / Plus

                                                                       
Query: 241 attcatcggaagatgggagacactgctcttatttcagaagggtccctgcacgagttttac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1   attcatcggaagatgggagacactgctcttatttcagaagggtccctgcacgagttt-ac 59

                                                                       
Query: 301 cagaaggtgctgctgaattgtgtggcatacaaccttcagaagtggcatggttagaagaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  cagaaggtgctgctgaattgtgtggcatacaaccttcagaagtggcatggttagaagaaa 119

                                                                       
Query: 361 ctccgcctccagaaaactttgtggtgcagaggggtctatataaaggcccaaatattaggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ctccgcctccagaaaactttgtggtgcagaggggtctatataaaggcccaaatattaggc 179

             
Query: 421 tt 422
           ||
Sbjct: 180 tt 181


>gi|268523173|gb|FM893939.1|FM893939 FM893939 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004887,
           mRNA sequence
          Length = 567

 Score =  266 bits (134), Expect = 2e-71
 Identities = 134/134 (100%)
 Strand = Plus / Plus

                                                                       
Query: 289 cacgagttttaccagaaggtgctgctgaattgtgtggcatacaaccttcagaagtggcat 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4   cacgagttttaccagaaggtgctgctgaattgtgtggcatacaaccttcagaagtggcat 63

                                                                       
Query: 349 ggttagaagaaactccgcctccagaaaactttgtggtgcagaggggtctatataaaggcc 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  ggttagaagaaactccgcctccagaaaactttgtggtgcagaggggtctatataaaggcc 123

                         
Query: 409 caaatattaggctt 422
           ||||||||||||||
Sbjct: 124 caaatattaggctt 137