Jatropha Genome Database
- JcCB0137811.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0137811.20 + phase: 1 /TE/partial
(1446 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268519952|gb|FM889800.1|FM889800 FM889800 Jatropha curcas emb... 420 e-117
gi|268518825|gb|FM889068.1|FM889068 FM889068 Jatropha curcas emb... 408 e-114
gi|268518791|gb|FM889034.1|FM889034 FM889034 Jatropha curcas emb... 396 e-110
>gi|268519952|gb|FM889800.1|FM889800 FM889800 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003537,
mRNA sequence
Length = 557
Score = 420 bits (212), Expect = e-117
Identities = 360/411 (87%), Gaps = 15/411 (3%)
Strand = Plus / Plus
Query: 593 tcccaagacgccgcaactgaatggtttggctgagaggatgaatagaactttgatggaggg 652
||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| |
Sbjct: 145 tcccaagacatcgcaactgaacaatttggctgagaggatgaacagaactttgatggagag 204
Query: 653 agtcagatatttactctcacatgcaaagttatttaaaagattttggggtgaagctttact 712
|||||||| | ||||||||||||||||||| | ||| |||||||||||| ||||||||||
Sbjct: 205 agtcagatgtgtactctcacatgcaaagttgtctaagagattttggggtaaagctttact 264
Query: 713 cacagcagtttatcgttcaccctgtttccctctacagtatgatactcc--agagagagta 770
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 tacagtagtttatcgttcaccctgtttccctctacagtatgatactccagagagagagta 324
Query: 771 tggtcaggaaaggatgtttcctatgatcatttgcgggtgtttggttgcaaagcctttgta 830
|||| |||||| ||||| ||||||||||||||||||||||||| ||| |||||||| |||
Sbjct: 325 tggttaggaaatgatgtatcctatgatcatttgcgggtgtttgattgtaaagccttcgta 384
Query: 831 catgtcccgaaggatgaacggtcgaagcttaatgtcaagactagacagtgtgtattcatt 890
||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 385 catgtcctgaaggatgaacggtcgaagcttgatgttcagactagacagtgtgtattcatt 444
Query: 891 ggctatggccaagaccaatgtggctata-------------aatccagaagacgattata 937
|| ||||||| |||||||| |||||||| ||||| ||||| ||||||
Sbjct: 445 ggttatggcccagaccaatttggctataagttttatgacccaatcccaaagacaattata 504
Query: 938 agaaatcatgatgctgtatttgttgaagatcagactattgaagatattgaa 988
||||||| ||| | ||||||||||||| || ||||||||||||||||||||
Sbjct: 505 agaaatcgtgaagttgtatttgttgaaaattagactattgaagatattgaa 555
>gi|268518825|gb|FM889068.1|FM889068 FM889068 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002630,
mRNA sequence
Length = 509
Score = 408 bits (206), Expect = e-114
Identities = 344/382 (90%), Gaps = 11/382 (2%)
Strand = Plus / Minus
Query: 1 catgcatccaaatctcgattggtaga-tttgatgatgaaggtttctgtagcaccttcaga 59
||||| ||||||||||| |||| ||| |||||||||||||||||||||||||||||| |
Sbjct: 376 catgcgtccaaatctcgtttggcagactttgatgatgaaggtttctgtagcaccttctaa 317
Query: 60 aatagtccatggaagctcacagaaggttcatttgtggtagctaaagaccgaaagctacac 119
|| ||| ||||||||||| |||||||||||||||||||| ||||| ||||| | ||
Sbjct: 316 catggtcagtggaagctcaccaaaggttcatttgtggtagctgaagactgaaagatgtac 257
Query: 120 gtgatgcatgcgaaactctcccaagacactttgagtgtagtg-gagaatgacagtacagt 178
|||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 256 gtgatgcatgcgtaactcttccaagacactttgagtgtagtcagagaatgacagtacagt 197
Query: 179 tgaattgtggcataaacgactacgccacatgagtaagaaaactctggcaagaaagaacgt 238
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tgaattgtggcattt--gactacgccacatgagtaagaaaactctggcaagaaagaacgt 139
Query: 239 actacctggattggatgaagttcacctagacaagtgtcctgattgtatggcgggaaagca 298
||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||
Sbjct: 138 actacctggattggatgaagttcacctagacaagtatcctgattggatggcgagaaagct 79
Query: 299 aaacag-agtagctttcaagattatccctccttctagaatgaagaa-ggtattaaatctg 356
|||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 78 aaacagcagtagctttcaagatta----cccttctagaatgaagaatcgtattaaatctg 23
Query: 357 attcattcagat-ttgtgtgga 377
|||||||||||| |||||||||
Sbjct: 22 attcattcagatcttgtgtgga 1
>gi|268518791|gb|FM889034.1|FM889034 FM889034 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002587,
mRNA sequence
Length = 563
Score = 396 bits (200), Expect = e-110
Identities = 385/444 (86%), Gaps = 12/444 (2%)
Strand = Plus / Plus
Query: 467 ttctaaacctggttgagagacagtcaggcaagaagctgaagtgtatcaggacagataatg 526
|||||||| |||||||| |||| | ||||||||||||||||| ||||| ||||||||||
Sbjct: 120 ttctaaacttggttgagcgacaaacgggcaagaagctgaagtgcatcagaacagataatg 179
Query: 527 gtggagaatacactgggccatttgatgctttctgcaaagagcatggcattc-acatcaaa 585
|||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||
Sbjct: 180 gtggagaatacactgggccatttgatactttctgcaaagagcatggtattcgacatcaaa 239
Query: 586 cgacacctcccaagacgccgcaactgaatggtttggctgagaggatgaatagaactttga 645
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 240 caacacctcccaagacgccgcaactgaatggtttggctgagaggatgaatagaacttaaa 299
Query: 646 tggagggagtcagatatttactctcacatgcaaagttatttaaaagatttt-ggggtgaa 704
|||| ||||||||| |||| ||||||||| |||||| | ||||||||||| ||||||||
Sbjct: 300 cggagagagtcagatgtttattctcacatgtaaagttgtctaaaagattttgggggtgaa 359
Query: 705 gctttactcacagcagtt---------tatcgttcaccctgtttccctctacagtatgat 755
||| | || ||||||||| |||||||||| ||| | ||||| |||||||||
Sbjct: 360 gctcttcttacagcagttcatcttataaatcgttcaccttgtgttcctcttcagtatgat 419
Query: 756 actccagagagagtatggtcaggaaaggatgtttcctatgatcatttgcgggtgtttggt 815
| |||| | |||||||||||||||||| |||||||||||||| | |||| ||||| ||||
Sbjct: 420 aatccacaaagagtatggtcaggaaagaatgtttcctatgattacttgcaggtgtatggt 479
Query: 816 tgcaaa-gcctttgtacatgtcccgaaggatgaacggtcgaagcttaatgtcaagactag 874
|||||| || ||||| ||| | || |||||||| |||| |||||| ||||||| ||| |
Sbjct: 480 tgcaaaggcatttgtgcatattcctaaggatgagaggtctaagcttgatgtcaaaactcg 539
Query: 875 acagtgtgtattcattggctatgg 898
||| ||||||||||||||||||||
Sbjct: 540 acaatgtgtattcattggctatgg 563