Jatropha Genome Database

JcCB0136181.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0136181.20 - phase: 0 /pseudo/partial
         (639 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268526346|gb|FM891602.1|FM891602 FM891602 Jatropha curcas emb...   890   0.0  

>gi|268526346|gb|FM891602.1|FM891602 FM891602 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_001924,
           mRNA sequence
          Length = 630

 Score =  890 bits (449), Expect = 0.0
 Identities = 503/517 (97%), Gaps = 3/517 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtctcaagctctttccaatttaagcttttctcttcctttatcatcaaaaagcacttct 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 114 atgtctcaagctctttccaatttaaccttttctcttcctttatcatcaaaaagcacttct 173

                                                                       
Query: 61  gttcgatcaagaaaccttcgtttcattgtcaaagcaaaggcagcagaaaatagagacaat 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 gctcgatcaagaaaccttcgtttcattgtcaaagcaaaggcagcagaaaatagagacaat 233

                                                                       
Query: 121 cttgatcatttacagaaagccaccaagcagcagcaccaccaacaaccccaaaccaagaaa 180
           |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 234 cttgatcatttacagaaagccaccaagcagcagcaccatcaacacccccaaaccaagaaa 293

                                                                       
Query: 181 agaacggctcctgttgctccagtagggctatgggacagatttcctacagctagaacagta 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 294 agaacggctcctgttgctccagttgggctatgggacagatttcctacagctagaacagta 353

                                                                       
Query: 241 cagcagatgatggagacgatggagagaatgatggaag-acccttttgcctatacgggtac 299
           ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||
Sbjct: 354 cagcagatgatggagacgatggagagaatgatggaagcacccttttgtctatacggctac 413

                                                                       
Query: 300 ttggccatcagagccaccatcaccagttgaacgaagtgggtatagcagaggaaggactcc 359
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttggccatcagagccaccttcaccagttgaacgaagtgggtatagcagaggaaggactcc 473

                                                                       
Query: 360 atgggagataaaagaaggagaaacagagtacaagatgagatttgacatgcctggaatgac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 atgggagataaaagaaggagaaacagagtacaagatgagatttgacatgcctggaatgac 533

                                                                       
Query: 420 taaagaagatgtgaaggtatggg-tgaagagaagatgttgg-tttgaaagcagaggaggt 477
           |||||||||||||||||| |||| |||||||||||||| || ||||||||||||| ||||
Sbjct: 534 taaagaagatgtgaaggtgtgggttgaagagaagatgtaggttttgaaagcagagaaggt 593

                                                
Query: 478 gcccgagaaaaataatgtcaatggtgcacaaaatgga 514
           |||||||||||||||||||||||||||||||||||||
Sbjct: 594 gcccgagaaaaataatgtcaatggtgcacaaaatgga 630