Jatropha Genome Database

JcCB0133611.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0133611.20 + phase: 2 /partial
         (523 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237680898|gb|GO247055.1|GO247055 JcrME_RL0599 Expressed seque...   281   4e-76
gi|237680890|gb|GO247047.1|GO247047 JcrME_RL0591 Expressed seque...   198   4e-51
gi|268521231|gb|FM891950.1|FM891950 FM891950 Jatropha curcas emb...   121   8e-28

>gi|237680898|gb|GO247055.1|GO247055 JcrME_RL0599 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 632

 Score =  281 bits (142), Expect = 4e-76
 Identities = 189/197 (95%), Gaps = 7/197 (3%)
 Strand = Plus / Minus

                                                                       
Query: 309 ctgatagtcggtttgctttagaaaattacaaaaaccttgctagccgatcactggttgacg 368
           |||||||||| ||||||||||||| | ||||||  |||||||||||||||||| ||||||
Sbjct: 610 ctgatagtcg-tttgctttagaaact-acaaaa--cttgctagccgatcactg-ttgacg 556

                                                                       
Query: 369 atgttttgaaaaaggttaatggactgaagccaattgctgatgaactgggtgtgcctttat 428
           |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 atgttt-gaaaaag-ttaatggactgaagccaattgctgatgaactgggtgtgcctttat 498

                                                                       
Query: 429 ctcaacttgcaattgcatggtgtgctgctaatcccaatgtctcatcagttattactggtg 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctcaacttgcaattgcatggtgtgctgctaatcccaatgtctcatcagttattactggtg 438

                            
Query: 489 ctacaagggagtctcag 505
           |||||||||||||||||
Sbjct: 437 ctacaagggagtctcag 421


>gi|237680890|gb|GO247047.1|GO247047 JcrME_RL0591 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 628

 Score =  198 bits (100), Expect = 4e-51
 Identities = 114/116 (98%), Gaps = 2/116 (1%)
 Strand = Plus / Minus

                                                                       
Query: 390 gactgaagccaattgctgatgaactgggtgtgcctttatctcaacttgcaattgcatggt 449
           ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 540 gactgaagccaat-gctgatgaactgggtgtgcctt-atctcaacttgcaattgcatggt 483

                                                                   
Query: 450 gtgctgctaatcccaatgtctcatcagttattactggtgctacaagggagtctcag 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtgctgctaatcccaatgtctcatcagttattactggtgctacaagggagtctcag 427


>gi|268521231|gb|FM891950.1|FM891950 FM891950 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002374,
           mRNA sequence
          Length = 593

 Score =  121 bits (61), Expect = 8e-28
 Identities = 61/61 (100%)
 Strand = Plus / Plus

                                                                       
Query: 225 ccaactatggccttggtctcaccacatggagtccacttgcatctggggtgctcacaggaa 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ccaactatggccttggtctcaccacatggagtccacttgcatctggggtgctcacaggaa 592

            
Query: 285 a 285
           |
Sbjct: 593 a 593