Jatropha Genome Database

JcCB0126561.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0126561.10 + phase: 2 /pseudo/partial
         (532 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268526257|gb|FM891513.1|FM891513 FM891513 Jatropha curcas emb...   107   1e-23

>gi|268526257|gb|FM891513.1|FM891513 FM891513 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_001820,
           mRNA sequence
          Length = 632

 Score =  107 bits (54), Expect = 1e-23
 Identities = 81/90 (90%)
 Strand = Plus / Minus

                                                                       
Query: 426 ttgggtttgagcaactggttaagacgatggtggatgaagatattgagtttgctaaaagag 485
           ||||||||||||||||| |||||| |||||||||||||||||||||  | || |||||||
Sbjct: 632 ttgggtttgagcaactgtttaagatgatggtggatgaagatattgaaatagcgaaaagag 573

                                         
Query: 486 agaagatgcttgttgatgttggttacatgg 515
           ||||| |||||||||||| ||| |||||||
Sbjct: 572 agaaggtgcttgttgatgctggctacatgg 543