Jatropha Genome Database
- JcCB0125511.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0125511.20 + phase: 0 /TE/partial
(3155 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268518791|gb|FM889034.1|FM889034 FM889034 Jatropha curcas emb... 674 0.0
gi|268519952|gb|FM889800.1|FM889800 FM889800 Jatropha curcas emb... 274 6e-73
gi|268518825|gb|FM889068.1|FM889068 FM889068 Jatropha curcas emb... 123 1e-27
gi|268518200|gb|FM888474.1|FM888474 FM888474 Jatropha curcas emb... 100 2e-20
>gi|268518791|gb|FM889034.1|FM889034 FM889034 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002587,
mRNA sequence
Length = 563
Score = 674 bits (340), Expect = 0.0
Identities = 423/448 (94%), Gaps = 2/448 (0%)
Strand = Plus / Plus
Query: 1597 caatttctaaacttggttgagagacagacaggcaagaagctgaagtgcatcagaacagat 1656
||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||
Sbjct: 116 caatttctaaacttggttgagcgacaaacgggcaagaagctgaagtgcatcagaacagat 175
Query: 1657 aatggtggagaatacactgggccatttgatgctttctgcaaagagcatggtattcgacat 1716
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 176 aatggtggagaatacactgggccatttgatactttctgcaaagagcatggtattcgacat 235
Query: 1717 caaacaacacctcccaagacaccgcaattgaatggtttggctgagaggatgaacagaact 1776
|||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||
Sbjct: 236 caaacaacacctcccaagacgccgcaactgaatggtttggctgagaggatgaatagaact 295
Query: 1777 ttgatggagagagtcagatgtttactctcacatgcaaagttgtctaaaagatttt-gggg 1835
| | ||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||
Sbjct: 296 taaacggagagagtcagatgtttattctcacatgtaaagttgtctaaaagattttggggg 355
Query: 1836 tgaagctcttcttacagcagttcatcttataaatcgttcaccttgtgttcctcttcagta 1895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tgaagctcttcttacagcagttcatcttataaatcgttcaccttgtgttcctcttcagta 415
Query: 1896 tgatactccagaacgagtatggtcgagaaaggatgtttcctatgatcacttgcgggtgtt 1955
||||| |||| || |||||||||| ||||| |||||||||||||| |||||| |||||
Sbjct: 416 tgataatccacaaagagtatggtcaggaaagaatgtttcctatgattacttgcaggtgta 475
Query: 1956 tggttgcaaa-gcatttgtgcatattcttaaggatgagaggtctaagcttgatgtcaaga 2014
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 476 tggttgcaaaggcatttgtgcatattcctaaggatgagaggtctaagcttgatgtcaaaa 535
Query: 2015 ctcgacaatgtgtattcattggctatgg 2042
||||||||||||||||||||||||||||
Sbjct: 536 ctcgacaatgtgtattcattggctatgg 563
>gi|268519952|gb|FM889800.1|FM889800 FM889800 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003537,
mRNA sequence
Length = 557
Score = 274 bits (138), Expect = 6e-73
Identities = 350/421 (83%), Gaps = 11/421 (2%)
Strand = Plus / Plus
Query: 1728 tcccaagacaccgcaattgaatggtttggctgagaggatgaacagaactttgatggagag 1787
|||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 145 tcccaagacatcgcaactgaacaatttggctgagaggatgaacagaactttgatggagag 204
Query: 1788 agtcagatgtttactctcacatgcaaagttgtctaaaagattttggggtgaagctcttct 1847
|||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| | ||
Sbjct: 205 agtcagatgtgtactctcacatgcaaagttgtctaagagattttggggtaaagctttact 264
Query: 1848 tacagcagttcatcttataaatcgttcaccttgtgttcctcttcagtatgatactcc--a 1905
||||| |||| |||||||||| ||| | ||||| |||||||||||||| |
Sbjct: 265 tacagtagtt---------tatcgttcaccctgtttccctctacagtatgatactccaga 315
Query: 1906 gaacgagtatggtcgagaaaggatgtttcctatgatcacttgcgggtgtttggttgcaaa 1965
|| ||||||||| |||| ||||| ||||||||||| ||||||||||||| ||| |||
Sbjct: 316 gagagagtatggttaggaaatgatgtatcctatgatcatttgcgggtgtttgattgtaaa 375
Query: 1966 gcatttgtgcatattcttaaggatgagaggtctaagcttgatgtcaagactcgacaatgt 2025
|| || || ||| | || |||||||| |||| ||||||||||| ||||| |||| |||
Sbjct: 376 gccttcgtacatgtcctgaaggatgaacggtcgaagcttgatgttcagactagacagtgt 435
Query: 2026 gtattcattggctatggtcaagatcaatttggctatagattttttgatccaatccagaaa 2085
||||||||||| ||||| | ||| ||||||||||||| |||| ||| ||||||| ||
Sbjct: 436 gtattcattggttatggcccagaccaatttggctataagttttatgacccaatcccaaag 495
Query: 2086 aagatgataagaagtagagatgctgtatttgttgaaaatcagactattgaagatgttgaa 2145
| || ||||||| | | || | |||||||||||||||| |||||||||||||| |||||
Sbjct: 496 acaattataagaaatcgtgaagttgtatttgttgaaaattagactattgaagatattgaa 555
Query: 2146 a 2146
|
Sbjct: 556 a 556
>gi|268518825|gb|FM889068.1|FM889068 FM889068 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002630,
mRNA sequence
Length = 509
Score = 123 bits (62), Expect = 1e-27
Identities = 122/142 (85%), Gaps = 5/142 (3%)
Strand = Plus / Minus
Query: 22 atgatcagtctaaatggcgtaaattaccatatatggagaaataaaatgagagatctcctt 81
||||||| ||||||||||| ||||||||||||||||||||| | || ||||||||
Sbjct: 509 atgatcaatctaaatggcgggaattaccatatatggagaaattatat-----atctcctt 455
Query: 82 atggtaaccaaaatgcatttgcccatgtttggttcaagcaaaccggaagacaagactgat 141
|||||| ||||||| ||||||| ||||| |||||| |||||||||||||||||||||
Sbjct: 454 atggtactcaaaatgtatttgcctgtgtttagttcaactaaaccggaagacaagactgat 395
Query: 142 gaagaatgggctttcgagcatg 163
|| |||| ||||||||||||||
Sbjct: 394 gaggaataggctttcgagcatg 373
Score = 77.8 bits (39), Expect = 7e-14
Identities = 70/79 (88%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 1095 aatctcggttggcagactt-gatgatgaaaatttctgtagcaccttcagaaatgggcagt 1153
||||||| ||||||||||| ||||||||| |||||||||||||||| | |||| ||||
Sbjct: 366 aatctcgtttggcagactttgatgatgaaggtttctgtagcaccttctaacatggtcagt 307
Query: 1154 ggaagctcacaaaaggttc 1172
|||||||||| ||||||||
Sbjct: 306 ggaagctcaccaaaggttc 288
>gi|268518200|gb|FM888474.1|FM888474 FM888474 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001895,
mRNA sequence
Length = 495
Score = 99.6 bits (50), Expect = 2e-20
Identities = 107/127 (84%), Gaps = 13/127 (10%)
Strand = Plus / Plus
Query: 3027 ttttgctctatgtagatgatatgttgattgttggtcagaattctgtcagaattaatagct 3086
||||||||||||| | |||||| ||||||||||||||||||||| ||||
Sbjct: 3 ttttgctctatgtggttgatatattgattgttggtcagaattct------------agct 50
Query: 3087 tgaagaaatagctaagtaagtcttttgctatg-aagacttaggaccagcaaagtagattc 3145
|||||||| ||||||||||||||||||||||| ||||||| |||||||||||| | ||||
Sbjct: 51 tgaagaaacagctaagtaagtcttttgctatgaaagacttgggaccagcaaagcaaattc 110
Query: 3146 ttggcat 3152
|||||||
Sbjct: 111 ttggcat 117