Jatropha Genome Database

JcCB0125511.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0125511.10 - phase: 0 /pseudo
         (695 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268520250|gb|FM890098.1|FM890098 FM890098 Jatropha curcas emb...   628   e-180

>gi|268520250|gb|FM890098.1|FM890098 FM890098 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003893,
           mRNA sequence
          Length = 495

 Score =  628 bits (317), Expect = e-180
 Identities = 324/325 (99%), Gaps = 1/325 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggtgacattgcttgctctaatggaattaccaatggtaaatgccattcatcacctaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 atgggtgacattgcttgctctaatggaattaccaatggtaaatgccattcatcacctaat 230

                                                                       
Query: 61  ggatatagaaagagttgctggtatgaagaagagattgaagagaacttgagatggtgtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ggatatagaaagagttgctggtatgaagaagagattgaagagaacttgagatggtgtttt 290

                                                                       
Query: 121 gctctcaatagtattttgcacacaggtgcttctcagtatcaggacattgccctattagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gctctcaatagtattttgcacacaggtgcttctcagtatcaggacattgccctattagac 350

                                                                       
Query: 181 acaaaaccatttggaaaggctttagtcattgatggaaagcttcaaagtgcagaggtggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 acaaaaccatttggaaaggctttagtcattgatggaaagcttcaaagtgcagaggtggat 410

                                                                       
Query: 241 gaattcatctaccatgaatcccttgttcatccagc-tcttcttcatcattctaatccaaa 299
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 411 gaattcatctaccatgaatcccttgttcatccagcgtcttcttcatcattctaatccaaa 470

                                    
Query: 300 gagcatctttattatgggaggaggt 324
           |||||||||||||||||||||||||
Sbjct: 471 gagcatctttattatgggaggaggt 495