Jatropha Genome Database

JcCB0121611.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0121611.10 + phase: 0 
         (897 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268522729|gb|FM896172.1|FM896172 FM896172 Jatropha curcas emb...    92   1e-18

>gi|268522729|gb|FM896172.1|FM896172 FM896172 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003340,
           mRNA sequence
          Length = 599

 Score = 91.7 bits (46), Expect = 1e-18
 Identities = 121/146 (82%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcatgcttgtggtcatgattctcatgtgtcaatgcttcttggagcagccaaattactc 60
           |||||||||||||| |||||| |||| ||  ||||||| ||||||||||| || ||||| 
Sbjct: 438 atgcatgcttgtggccatgatgctcacgttacaatgctgcttggagcagctaagttactt 497

                                                                       
Query: 61  cagcaaaagagaaatgaaataaagggtactgtgaagcttgttttccagccaggagaagaa 120
           || |  |||| | || |  ||||||||||||| |||||||| ||||| || || ||||||
Sbjct: 498 caacgcaagaaagataagttaaagggtactgttaagcttgtcttccaacctggggaagaa 557

                                     
Query: 121 ggttatgctggtgcttaccatatgtt 146
           ||  |||| |||||||||||||||||
Sbjct: 558 gggcatgccggtgcttaccatatgtt 583