Jatropha Genome Database

JcCB0121101.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0121101.10 + phase: 0 /partial
         (1135 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523033|gb|FM896476.1|FM896476 FM896476 Jatropha curcas emb...   377   e-104
gi|262090857|gb|GT229215.1|GT229215 JC780 Jatropha seeds from fr...   101   2e-21

>gi|268523033|gb|FM896476.1|FM896476 FM896476 Jatropha curcas embryo
            71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003695,
            mRNA sequence
          Length = 446

 Score =  377 bits (190), Expect = e-104
 Identities = 221/226 (97%), Gaps = 4/226 (1%)
 Strand = Plus / Plus

                                                                        
Query: 914  ctgaaagtttaaatcctggagaacagatctttgaaaagataatttct-ggtatgtacttg 972
            |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 20   ctgaaagtttaaatcctgaagaacagatctttgaaaagataatttctaggtatgtacttg 79

                                                                        
Query: 973  ggagaaattgtaagaagagttctact-taggatg-gctgaagaagcttcatttttt-ggt 1029
            |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||
Sbjct: 80   ggagaaattgtaagaagagttctactataggatgcgctgaagaagcttcattttttcggt 139

                                                                        
Query: 1030 gatgctgttccaccaaaacttagggttcccttcattttgagaacacctgatatgtcagca 1089
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140  gatgctgttccaccaaaacttagggttcccttcattttgagaacacctgatatgtcagca 199

                                                          
Query: 1090 atgcatcatgatacatcctctgatctcaaagtggtggggaataaat 1135
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200  atgcatcatgatacatcctctgatctcaaagtggtggggaataaat 245


>gi|262090857|gb|GT229215.1|GT229215 JC780 Jatropha seeds from fruits
            at three stages of maturation Jatropha curcas cDNA clone
            PL19SE.G11.scf 5', mRNA sequence
          Length = 668

 Score =  101 bits (51), Expect = 2e-21
 Identities = 147/179 (82%)
 Strand = Plus / Plus

                                                                        
Query: 925  aatcctggagaacagatctttgaaaagataatttctggtatgtacttgggagaaattgta 984
            ||||| || |||||||| ||||||||||  |||||||||||||| ||||||||||| |||
Sbjct: 93   aatccaggggaacagatttttgaaaagactatttctggtatgtatttgggagaaatagta 152

                                                                        
Query: 985  agaagagttctacttaggatggctgaagaagcttcattttttggtgatgctgttccacca 1044
             | ||||| ||| |    |||||||| |||||| | || |||||||||| ||||||| ||
Sbjct: 153  cgcagagtcctagtggaaatggctgaggaagctgctttctttggtgatgttgttccatca 212

                                                                       
Query: 1045 aaacttagggttcccttcattttgagaacacctgatatgtcagcaatgcatcatgatac 1103
            ||||| | | |||| || ||||| || || || || ||||| |||||||||||||||||
Sbjct: 213  aaactgaagattccatttattttaaggactccagacatgtctgcaatgcatcatgatac 271