Jatropha Genome Database

JcCB0119211.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0119211.10 + phase: 0 /TE/partial
         (1553 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518200|gb|FM888474.1|FM888474 FM888474 Jatropha curcas emb...   434   e-121
gi|237679871|gb|GO247176.1|GO247176 JcrME_RL0720 Expressed seque...    60   8e-09

>gi|268518200|gb|FM888474.1|FM888474 FM888474 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001895,
            mRNA sequence
          Length = 495

 Score =  434 bits (219), Expect = e-121
 Identities = 315/347 (90%)
 Strand = Plus / Plus

                                                                        
Query: 1207 agacttgggaccagcaaagcagattcttggcatgaagatcgaagagccaagaaattatgg 1266
            ||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct: 85   agacttgggaccagcaaagcaaattcttggcataaagatcaaagagccaagaaattatgg 144

                                                                        
Query: 1267 ttgtcacatgagaagtacattgagaaagtacttcaaaggttcagaatggagaatgctaaa 1326
            |||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct: 145  ttgtcacaggagaagtacattgagaaagtacttcaaaggtttagaatggaaaacgctaaa 204

                                                                        
Query: 1327 gcggttagttgtcctcttactaatcactttaaattgagttctaaacagtacccttctacc 1386
            || ||||||| |||||||| |||| |||||||||||||||||||| |||  |||||||  
Sbjct: 205  gctgttagttatcctcttaataataactttaaattgagttctaaatagtgtccttctagg 264

                                                                        
Query: 1387 gatcgagagaaggaagaaatggaaaagattccatatgcttcagcagttggaagcttgatg 1446
            ||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265  gatggagagaaggaagaaaaggaaaagattccatatgcttcagcagttgaaagcttgatg 324

                                                                        
Query: 1447 tatgccatgatttgtacacggccagatattactcactcagttggagtagtgagtcggttg 1506
             ||  |||||||||||||| || ||||||| ||||||||||| |||||||||||||||| 
Sbjct: 325  aatatcatgatttgtacacagctagatattgctcactcagttagagtagtgagtcggttt 384

                                                           
Query: 1507 cttttaaattctggaaaggaatattggactgcagtgaaatggatttt 1553
            |||| |||| || ||||| || |||||||||||||||||||||||||
Sbjct: 385  ctttcaaatcctagaaagaaacattggactgcagtgaaatggatttt 431


>gi|237679871|gb|GO247176.1|GO247176 JcrME_RL0720 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 581

 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                             
Query: 770 tgtgggtcccacttgagtgggcaccaccacaaca 803
           ||||||||||||||||||||||||| ||||||||
Sbjct: 314 tgtgggtcccacttgagtgggcaccgccacaaca 281