Jatropha Genome Database

JcCB0118121.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0118121.20 - phase: 0 
         (2142 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|257030982|gb|GT008283.1|GT008283 TransId-237491 CAET42MIX Cof...   119   1e-26
gi|257022506|gb|GT005653.1|GT005653 TransId-230364 CAET42MIX Cof...   117   5e-26

>gi|257030982|gb|GT008283.1|GT008283 TransId-237491 CAET42MIX Coffea
           arabica cDNA clone CAET42MIX-CFEXV72TV similar to
           Phenylalanine ammonia lyase - Jatropha curcas, mRNA
           sequence
          Length = 766

 Score =  119 bits (60), Expect = 1e-26
 Identities = 206/252 (81%), Gaps = 2/252 (0%)
 Strand = Plus / Plus

                                                                       
Query: 730 ttctttgagttacagcctaaagaaggtcttgctcttgttaatggcacagcagttggttct 789
           ||||||||||| |||||||| || ||||| || || ||||||||||| || ||||| || 
Sbjct: 304 ttctttgagttgcagcctaaggagggtctagcactggttaatggcacggctgttgggtcg 363

                                                                       
Query: 790 gggttggcttctatggttctatttgaagcaaatgttcttgctg-tcttgtcagaaatatt 848
           || ||||| || |||||||||||||| |||||| || ||| |  |||| || ||| | ||
Sbjct: 364 ggtttggcctccatggttctatttgaggcaaat-ttattggtaatcttatctgaagtttt 422

                                                                       
Query: 849 atcagcaattttcgccgaagttatgaatggaaaacctgaatttactgatcatttgacaca 908
           |||||||||||| || ||||||||| | || ||||| || || | |||||||||||  ||
Sbjct: 423 atcagcaatttttgctgaagttatgcacgggaaaccggagttcattgatcatttgatgca 482

                                                                       
Query: 909 taaattgaagcatcatcctggtcaaattgaagctgcagctataatggagcatattttaga 968
           |||| ||||||| || | |||||| || ||||| ||||| |||||||| || ||||||||
Sbjct: 483 taaactgaagcaccaccttggtcagatagaagccgcagccataatggaacacattttaga 542

                       
Query: 969 tggtagctccta 980
           ||| || |||||
Sbjct: 543 tggcagttccta 554



 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 87/104 (83%)
 Strand = Plus / Plus

                                                                       
Query: 553 cacaatatcactccatgcttgcctctccgtggcacaatcactgcttcaggagatttagtt 612
           ||||| |||||||| || ||||||||||||||||| |||||||| || || ||||| |||
Sbjct: 127 cacaacatcactccgtgtttgcctctccgtggcacgatcactgcctctggcgatttggtt 186

                                                       
Query: 613 ccattatcttatattgctggattattaaccggccggcctaattc 656
           || || || || ||||| ||| | || |||||||| ||||||||
Sbjct: 187 cctttgtcatacattgccggactgttgaccggccgtcctaattc 230


>gi|257022506|gb|GT005653.1|GT005653 TransId-230364 CAET42MIX Coffea
           arabica cDNA clone CAET42MIX-CFEVH74TV similar to
           Phenylalanine ammonia lyase - Jatropha curcas, mRNA
           sequence
          Length = 520

 Score =  117 bits (59), Expect = 5e-26
 Identities = 212/263 (80%)
 Strand = Plus / Plus

                                                                       
Query: 394 ttcttgaatgctgggatttttggcaatggaacagaaacatgtcacacattacctcactct 453
           |||||||||||||| |||||||| |||||||||||  || ||||||| || || || |||
Sbjct: 12  ttcttgaatgctggaatttttggaaatggaacagagtcaggtcacacgttgccacattct 71

                                                                       
Query: 454 gcaacaagagcagcaatgctagtgagaataaatactcttcttcaaggttactcaggcatt 513
           || || || || |||||||||||||| || || || ||||| || || || || || || 
Sbjct: 72  gcgacgagggctgcaatgctagtgaggatcaacacccttctacaggggtattcggggatc 131

                                                                       
Query: 514 agatttgaaatcttggaagccattactaaactccttaaccacaatatcactccatgcttg 573
           |||||||| || || |||||  |||| || || || || ||||| |||||||| || |||
Sbjct: 132 agatttgagatattagaagctcttacaaagcttctcaatcacaacatcactccgtgtttg 191

                                                                       
Query: 574 cctctccgtggcacaatcactgcttcaggagatttagttccattatcttatattgctgga 633
           |||||||||||||| |||||||| || || ||||| ||||| || || || ||||| |||
Sbjct: 192 cctctccgtggcacgatcactgcctctggcgatttggttcctttgtcatacattgccgga 251

                                  
Query: 634 ttattaaccggccggcctaattc 656
            | || |||||||| ||||||||
Sbjct: 252 ctgttgaccggccgtcctaattc 274



 Score = 67.9 bits (34), Expect = 5e-11
 Identities = 141/174 (81%), Gaps = 2/174 (1%)
 Strand = Plus / Plus

                                                                       
Query: 730 ttctttgagttacagcctaaagaaggtcttgctcttgttaatggcacagcagttggttct 789
           ||||||||||| |||||||| || ||||| || || ||||||||||| || ||||| || 
Sbjct: 348 ttctttgagttgcagcctaaggagggtctagcactggttaatggcacggctgttgggtcg 407

                                                                       
Query: 790 gggttggcttctatggttctatttgaagcaaatgttcttgct-gtcttgtcagaaatatt 848
           || ||||| || | |||||||||||| |||||| || ||| |  |||| || ||| | ||
Sbjct: 408 ggtttggcctccacggttctatttgaggcaaat-ttattggtaatcttatctgaagtttt 466

                                                                 
Query: 849 atcagcaattttcgccgaagttatgaatggaaaacctgaatttactgatcattt 902
           |||||||||||| || ||||||||| | || ||||| || || | |||||||||
Sbjct: 467 atcagcaatttttgctgaagttatgcacgggaaaccggagttcattgatcattt 520