Jatropha Genome Database

JcCB0113371.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0113371.10 + phase: 2 /partial
         (547 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518930|gb|FM887397.1|FM887397 FM887397 Jatropha curcas emb...   456   e-128
gi|268516657|gb|FM887136.1|FM887136 FM887136 Jatropha curcas emb...   385   e-107

>gi|268518930|gb|FM887397.1|FM887397 FM887397 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000590,
           mRNA sequence
          Length = 535

 Score =  456 bits (230), Expect = e-128
 Identities = 230/230 (100%)
 Strand = Plus / Minus

                                                                       
Query: 291 ctcgagtgaagccatacatctgcaccatgccactgaagatggatgagggctggaatcaaa 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ctcgagtgaagccatacatctgcaccatgccactgaagatggatgagggctggaatcaaa 452

                                                                       
Query: 351 ttcagttgaatttggctgattttaccagaagggcctatggaacaaattatgttgagactt 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttcagttgaatttggctgattttaccagaagggcctatggaacaaattatgttgagactt 392

                                                                       
Query: 411 taagagttcaggttcatgcaaattgccgcctgcggagaatctatttctctgaccgcctct 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 taagagttcaggttcatgcaaattgccgcctgcggagaatctatttctctgaccgcctct 332

                                                             
Query: 471 actcagaagaggagctccctccagaatttaaactctaccttccaatgcag 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 actcagaagaggagctccctccagaatttaaactctaccttccaatgcag 282


>gi|268516657|gb|FM887136.1|FM887136 FM887136 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000237,
           mRNA sequence
          Length = 452

 Score =  385 bits (194), Expect = e-107
 Identities = 194/194 (100%)
 Strand = Plus / Plus

                                                                       
Query: 327 agatggatgagggctggaatcaaattcagttgaatttggctgattttaccagaagggcct 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agatggatgagggctggaatcaaattcagttgaatttggctgattttaccagaagggcct 60

                                                                       
Query: 387 atggaacaaattatgttgagactttaagagttcaggttcatgcaaattgccgcctgcgga 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atggaacaaattatgttgagactttaagagttcaggttcatgcaaattgccgcctgcgga 120

                                                                       
Query: 447 gaatctatttctctgaccgcctctactcagaagaggagctccctccagaatttaaactct 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaatctatttctctgaccgcctctactcagaagaggagctccctccagaatttaaactct 180

                         
Query: 507 accttccaatgcag 520
           ||||||||||||||
Sbjct: 181 accttccaatgcag 194