Jatropha Genome Database

JcCB0108291.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0108291.20 + phase: 0 /partial
         (243 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268520575|gb|FM889333.1|FM889333 FM889333 Jatropha curcas emb...   379   e-105

>gi|268520575|gb|FM889333.1|FM889333 FM889333 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002972,
           mRNA sequence
          Length = 499

 Score =  379 bits (191), Expect = e-105
 Identities = 230/243 (94%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgattgcttgtttctacagtaagcgggtacatccaaggactttgaaaagtggagattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atgattgcttgtttctacagtaagcgggtacatccaaggactttgaaaagtggagattca 201

                                                                       
Query: 61  ttgctgatcagactgttagaccacgaatcccatagtcactctagagggaaatttagaccc 120
            || |||||||||||||||||||||||||||| | |||| ||||||||||||| ||| ||
Sbjct: 200 gtgttgatcagactgttagaccacgaatcccagaatcaccctagagggaaattcagaacc 141

                                                                       
Query: 121 aattgccatggaccattcaaaatccagaagctgtcggataagggtgccgctgaattggtc 180
           ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 140 aattggcatggaccattcaaaatccaggagctgtcggataagggtgccgctgaattggtc 81

                                                                       
Query: 181 acttcagaagggaagcctgtcaatcggattgtcagtcaggatcaaatgaagagattcaat 240
           ||||| |||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct: 80  acttcggaagggaagcctgttaatcggattgtcagtcaagaacaaatgaagagattcaat 21

              
Query: 241 gtc 243
           |||
Sbjct: 20  gtc 18