Jatropha Genome Database
- JcCB0104661.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0104661.10 + phase: 0
(441 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237681020|gb|GO247656.1|GO247656 JcrME_RL1200 Expressed seque... 833 0.0
gi|268523499|gb|FM893822.1|FM893822 FM893822 Jatropha curcas emb... 817 0.0
gi|268521995|gb|FM892835.1|FM892835 FM892835 Jatropha curcas emb... 638 0.0
gi|218687350|gb|GH296004.1|GH296004 JCL453 Jatropha curcas total... 68 9e-12
gi|218687563|gb|GH295610.1|GH295610 JCL59 Jatropha curcas total ... 68 9e-12
gi|268523578|gb|FM892111.1|FM892111 FM892111 Jatropha curcas emb... 58 9e-09
gi|268525093|gb|FM895735.1|FM895735 FM895735 Jatropha curcas emb... 54 1e-07
>gi|237681020|gb|GO247656.1|GO247656 JcrME_RL1200 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 708
Score = 833 bits (420), Expect = 0.0
Identities = 434/441 (98%)
Strand = Plus / Plus
Query: 1 atgtcattcaggggactaagccggcctaatgcaacatcagggatgggtgttgctgatcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39 atgtcattcaggggactaagccggcctaatgcaacatcagggatgggtgttgctgatcac 98
Query: 61 agcataaacacattcttggaactgcagaggaagaaagttcaccgctatgtggtatttaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 agcataaacacattcttggaactgcagaggaagaaagttcaccgctatgtggtatttaga 158
Query: 121 attgatgnnnnnnngaaggaagtcgtggttgagaagactggtggccctgctgagagctac 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 attgatgaaaaaaagaaggaagtcgtggttgagaagactggtggccctgctgagagctac 218
Query: 181 gaggatttcgctgcatctttgcctgagaatgactgcagatatgctgtatatgactttgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gaggatttcgctgcatctttgcctgagaatgactgcagatatgctgtatatgactttgat 278
Query: 241 tttgtgacttctgagaattgtcagaagagcaagatatttttcattgcatggtctccttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tttgtgacttctgagaattgtcagaagagcaagatatttttcattgcatggtctccttca 338
Query: 301 acctctcgaatccgtgccaagatgctctacgcaacttctaaagacaggttcagacgagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 acctctcgaatccgtgccaagatgctctacgcaacttctaaagacaggttcagacgagag 398
Query: 361 ctggatggtatccactatgagattcaggccactgaccctactgagatggatctggaagtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctggatggtatccactatgagattcaggccactgaccctactgagatggatctggaagtg 458
Query: 421 atcagagaacgcgctaattaa 441
|||||||||||||||||||||
Sbjct: 459 atcagagaacgcgctaattaa 479
>gi|268523499|gb|FM893822.1|FM893822 FM893822 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004750,
mRNA sequence
Length = 578
Score = 817 bits (412), Expect = 0.0
Identities = 433/441 (98%), Gaps = 1/441 (0%)
Strand = Plus / Plus
Query: 1 atgtcattcaggggactaagccggcctaatgcaacatcagggatgggtgttgctgatcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 atgtcattcaggggactaagccggcctaatgcaacatcagggatgggtgttgctgatcac 81
Query: 61 agcataaacacattcttggaactgcagaggaagaaagttcaccgctatgtggtatttaga 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 82 agcataaacacattcttggaactgcagaggaagaaagt-caccgctatgtggtatttaga 140
Query: 121 attgatgnnnnnnngaaggaagtcgtggttgagaagactggtggccctgctgagagctac 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 attgatgaaaaaaagaaggaagtcgtggttgagaagactggtggccctgctgagagctac 200
Query: 181 gaggatttcgctgcatctttgcctgagaatgactgcagatatgctgtatatgactttgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaggatttcgctgcatctttgcctgagaatgactgcagatatgctgtatatgactttgat 260
Query: 241 tttgtgacttctgagaattgtcagaagagcaagatatttttcattgcatggtctccttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgtgacttctgagaattgtcagaagagcaagatatttttcattgcatggtctccttca 320
Query: 301 acctctcgaatccgtgccaagatgctctacgcaacttctaaagacaggttcagacgagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctctcgaatccgtgccaagatgctctacgcaacttctaaagacaggttcagacgagag 380
Query: 361 ctggatggtatccactatgagattcaggccactgaccctactgagatggatctggaagtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggatggtatccactatgagattcaggccactgaccctactgagatggatctggaagtg 440
Query: 421 atcagagaacgcgctaattaa 441
|||||||||||||||||||||
Sbjct: 441 atcagagaacgcgctaattaa 461
>gi|268521995|gb|FM892835.1|FM892835 FM892835 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003490,
mRNA sequence
Length = 422
Score = 638 bits (322), Expect = 0.0
Identities = 352/363 (96%), Gaps = 1/363 (0%)
Strand = Plus / Plus
Query: 1 atgtcattcaggggactaagccggcctaatgcaacatcagggatgggtgttgctgatcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 atgtcattcaggggactaagccggcctaatgcaacatcagggatgggtgttgctgatcac 119
Query: 61 agcataaacacattcttggaactgcagaggaagaaagttcaccgctatgtggtatttaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 agcataaacacattcttggaactgcagaggaagaaagttcaccgctatgtggtatttaga 179
Query: 121 attgatgnnnnnnngaaggaagtcgtggttgagaagactggtggccctgctgagagctac 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 attgatgaaaaaaagaaggaagtcgtggttgagaagactggtggccctgctgagagctac 239
Query: 181 gaggatttcgctgcatctttgcctgagaatgactgcagatatgctgtatatgactttgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gaggatttcgctgcatctttgcctgagaatgactgcagatatgctgtatatgactttgat 299
Query: 241 tttgtgacttctgagaattgtcagaagagcaagatatttttcattgcatggtctccttc- 299
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 300 tttgtgacttctgagaattgtccgaagagccagatatttttcattgcatggtctccttca 359
Query: 300 aacctctcgaatccgtgccaagatgctctacgcaacttctaaagacaggttcagacgaga 359
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 360 aacctctcgaatccgtgccaagatgctctacgcagcttctaaagacaggttcagacgaga 419
Query: 360 gct 362
|||
Sbjct: 420 gct 422
>gi|218687350|gb|GH296004.1|GH296004 JCL453 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 244
Score = 67.9 bits (34), Expect = 9e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 408 ggatctggaagtgatcagagaacgcgctaattaa 441
||||||||||||||||||||||||||||||||||
Sbjct: 2 ggatctggaagtgatcagagaacgcgctaattaa 35
>gi|218687563|gb|GH295610.1|GH295610 JCL59 Jatropha curcas total
leaf library Jatropha curcas cDNA, mRNA sequence
Length = 244
Score = 67.9 bits (34), Expect = 9e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 408 ggatctggaagtgatcagagaacgcgctaattaa 441
||||||||||||||||||||||||||||||||||
Sbjct: 2 ggatctggaagtgatcagagaacgcgctaattaa 35
>gi|268523578|gb|FM892111.1|FM892111 FM892111 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002589,
mRNA sequence
Length = 546
Score = 58.0 bits (29), Expect = 9e-09
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 253 gagaattgtcagaagagcaagatatttttcattgcatggtctcct 297
|||||||| |||||||||| ||| || ||||||||||||||||||
Sbjct: 542 gagaattgccagaagagcaggattttcttcattgcatggtctcct 498
>gi|268525093|gb|FM895735.1|FM895735 FM895735 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002711,
mRNA sequence
Length = 453
Score = 54.0 bits (27), Expect = 1e-07
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 209 atgactgcagatatgctgtatatgactttgattttgtgacttctgagaattgtcagaaga 268
|||| ||| |||||||||| ||||| ||||||||||| || | |||||||| |||||||
Sbjct: 366 atgagtgccgatatgctgtttatgattttgattttgtcacggcagagaattgccagaaga 425
Query: 269 gca 271
|||
Sbjct: 426 gca 428