Jatropha Genome Database

JcCB0104191.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0104191.10 + phase: 0 /partial
         (528 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523257|gb|FM894023.1|FM894023 FM894023 Jatropha curcas emb...   472   e-133

>gi|268523257|gb|FM894023.1|FM894023 FM894023 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004987,
           mRNA sequence
          Length = 516

 Score =  472 bits (238), Expect = e-133
 Identities = 292/304 (96%), Gaps = 7/304 (2%)
 Strand = Plus / Minus

                                                                       
Query: 229 ttgatgtcacgagaagttgaatatgcactggcccttacagccttatgggccatcgaagct 288
           |||||||||||||||||   ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 486 ttgatgtcacgagaagtg--atatgca-tggcccttacagccttatgggccatcgaagct 430

                                                                       
Query: 289 acataccaagagagctttgctcactgcttggaagatggcagcaaaaccccaccagaatta 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 acataccaagagagctttgctcactgcttggaagatggcagcaaaaccccaccagaatta 370

                                                                       
Query: 349 caggaaacttgccgaagatggggcaatgaaggttttggggaatattgtcgttctctgaag 408
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 369 caggaaacttgccgaagatggggcaatgaaggttttggggaatattgtcgttctttgaag 310

                                                                       
Query: 409 aaaattgcaaatcgataccttgagaaggctt--cagct-gatgtga-ttgcaaaagctga 464
            ||||||||||||||||||||||||||||||   |||| || |||| |||||||||||||
Sbjct: 309 gaaattgcaaatcgataccttgagaaggctttcaagctggaagtgatttgcaaaagctga 250

                                                                       
Query: 465 agtaactttactgcatgttcttgaacatgaagttgagttctggaacatgagccatagggg 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 agtaactttactgcatgttcttgaacatgaagttgagttctggaacatgagccatagggg 190

               
Query: 525 tacc 528
           ||||
Sbjct: 189 tacc 186