Jatropha Genome Database

JcCB0098751.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0098751.10 + phase: 1 /TE
         (3973 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268516533|gb|FM889693.1|FM889693 FM889693 Jatropha curcas emb...   714   0.0  

>gi|268516533|gb|FM889693.1|FM889693 FM889693 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003410,
            mRNA sequence
          Length = 544

 Score =  714 bits (360), Expect = 0.0
 Identities = 501/547 (91%), Gaps = 12/547 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1286 tgagagagggttgaatatgttggctaagaagtctctcataccattagccaaaggtaaaac 1345
            ||||| |||||||||||| |||||||||||||| ||||| ||||||||||||||||||| 
Sbjct: 544  tgagaaagggttgaatatattggctaagaagtccctcatcccattagccaaaggtaaaat 485

                                                                        
Query: 1346 -aaacccttgtgattattgtttatttgggaagcaacatcgtgtctcttttttgaaaagct 1404
             ||||||||  ||| ||||||||||||||||||||||||||||||| |||  ||||||||
Sbjct: 484  taaaccctttggatcattgtttatttgggaagcaacatcgtgtctcatttcagaaaagct 425

                                                                        
Query: 1405 ctagacggagagacaacaagttggagttggtacactctgacgtatgtggtcccatggagg 1464
            |||||||||||||||||||||||||||| ||||||||||| ||||||          |||
Sbjct: 424  ctagacggagagacaacaagttggagttcgtacactctgatgtatgt----------agg 375

                                                                        
Query: 1465 tagaatcacttagaggaagtagatattttcttacattcattgatgatttctcacggaaaa 1524
            ||||||||||| |||||||||| |||||||| || ||||||||||||||||| || ||||
Sbjct: 374  tagaatcacttggaggaagtaggtattttctaaccttcattgatgatttctcgcgaaaaa 315

                                                                        
Query: 1525 catggatatatttgttgcgcacaaaagaccaagtattcaagcactttcagcaattcc-at 1583
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 314  cattgatatatttgttgcgcacaaaagaccaagtattcaagcactttcagcaattcccat 255

                                                                        
Query: 1584 gcaatggtggaaagggagactggagtggccttgaagtgtttgcgcacggataatggtggt 1643
            || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 254  gcgatggtggaaagggagactggagtggcattgaagtgtttgcgcacggataatggtggt 195

                                                                        
Query: 1644 gagtatatttctaaggagtttagagattattgcagtcagcacggtatcaggcatgaaaag 1703
            || || || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 194  gaatacatctctaaggagtttagagattattgtagtcagcacggtatcaggcatgaaaag 135

                                                                        
Query: 1704 acagttcctggtacgcctcaacacaacggcgttgctgaacggatgaatcgcaccattatt 1763
            ||||| |||| |||||||||||| || || |||| |||||| ||||||||||||||| ||
Sbjct: 134  acagtacctgttacgcctcaacataatggtgttgttgaacgaatgaatcgcaccattgtt 75

                                                                        
Query: 1764 gagagagtcagatccatgctcaaaatggccaacttacctaagccattttggggagaagct 1823
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74   gagagagtcagatccatgctcaaaatggccaacttacctaagccattttggggagaagct 15

                   
Query: 1824 gtcaata 1830
            |||||||
Sbjct: 14   gtcaata 8