Jatropha Genome Database

JcCB0097811.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0097811.20 + phase: 0 /TE/partial
         (249 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268520575|gb|FM889333.1|FM889333 FM889333 Jatropha curcas emb...   377   e-105

>gi|268520575|gb|FM889333.1|FM889333 FM889333 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002972,
           mRNA sequence
          Length = 499

 Score =  377 bits (190), Expect = e-105
 Identities = 232/246 (94%)
 Strand = Plus / Minus

                                                                       
Query: 4   agaatgattgcttgtttctacagtaagcgggtacatccaatgactttgaaaaatggagat 63
           |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 263 agaatgattgcttgtttctacagtaagcgggtacatccaaggactttgaaaagtggagat 204

                                                                       
Query: 64  tcagtgctgatcatactgttagaccacgaattccagagtcaccctagagggaaattcaga 123
           |||||| |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 203 tcagtgttgatcagactgttagaccacgaatcccagaatcaccctagagggaaattcaga 144

                                                                       
Query: 124 cccaattggcatggaccattcaaaatccagaagctgtcggataagggtgccgctgaattg 183
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 143 accaattggcatggaccattcaaaatccaggagctgtcggataagggtgccgctgaattg 84

                                                                       
Query: 184 gtcactttggaagggaagcctatcaatcggattgtcagtcaggatcaaatgaagagattt 243
           ||||||| ||||||||||||| | ||||||||||||||||| || |||||||||||||| 
Sbjct: 83  gtcacttcggaagggaagcctgttaatcggattgtcagtcaagaacaaatgaagagattc 24

                 
Query: 244 aatgtc 249
           ||||||
Sbjct: 23  aatgtc 18