Jatropha Genome Database
- JcCB0097621.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0097621.20 - phase: 0 /partial
(467 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237680585|gb|GO246736.1|GO246736 JcrME_RL0280 Expressed seque... 712 0.0
gi|268517039|gb|FM892591.1|FM892591 FM892591 Jatropha curcas emb... 125 5e-29
>gi|237680585|gb|GO246736.1|GO246736 JcrME_RL0280 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 705
Score = 712 bits (359), Expect = 0.0
Identities = 427/440 (97%), Gaps = 11/440 (2%)
Strand = Plus / Plus
Query: 1 atggctccttcaagagtttcattactattattgcttgcatattttagctctttgatattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 atggctccttcaagagtttcattactattattgcttgcatattttagctctttgatattg 150
Query: 61 gttgcattgggtggtaacttctaccaagattttgacattacttggggagatggccgcgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 gttgcattgggtggtaacttctaccaagattttgacattacttggggagatggccgcgct 210
Query: 121 aagatactcaacaatggccagcttcttacactgaaccttgacaaagcctccggttctgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 aagatactcaacaatggccagcttcttacactgaaccttgacaaagcctccggttctgga 270
Query: 181 tttcaatcaaggaatgagtatttgtttggaaagattgacatgcaactcaagcttgttcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tttcaatcaaggaatgagtatttgtttggaaagattgacatgcaactcaagcttgttcct 330
Query: 241 ggcaattctgcaggcacggtcactgcctattatctatcctcaaaagggtctacttgggat 300
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 331 ggcaattctgca-gcacggtcactgcctattatctatcctc-aaagggtctacttgggat 388
Query: 301 gagatagactttgagttcttgggaaatttgagtggagatccttacattcttcacaccaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gagatagactttgagttcttgggaaatttgagtggagatccttacattcttcacaccaat 448
Query: 361 gtgtttagccaaggcaaaggaaacagagagcaacaattctatttatggttcgacccaact 420
||||||||||| ||||| ||||||||| ||| ||||||||||| |||||||| |||
Sbjct: 449 gtgtttagcca--gcaaa-gaaacagagggca--cattctatttat-gttcgacc--act 500
Query: 421 tctgatttccacacctattc 440
||||| ||||||||||||||
Sbjct: 501 tctga-ttccacacctattc 519
>gi|268517039|gb|FM892591.1|FM892591 FM892591 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003186,
mRNA sequence
Length = 556
Score = 125 bits (63), Expect = 5e-29
Identities = 147/175 (84%)
Strand = Plus / Plus
Query: 281 caaaagggtctacttgggatgagatagactttgagttcttgggaaatttgagtggagatc 340
||||||||||| | |||||||||||||| |||||||||||||||||| | ||||| ||||
Sbjct: 5 caaaagggtcttcatgggatgagatagattttgagttcttgggaaatctaagtggtgatc 64
Query: 341 cttacattcttcacaccaatgtgtttagccaaggcaaaggaaacagagagcaacaattct 400
|||||| | |||| || ||||| | | ||||||||| | ||||||||||||||||
Sbjct: 65 cttacactgttcatactaatgtaatcactcaaggcaaacgcgacagagagcaacaatttc 124
Query: 401 atttatggttcgacccaacttctgatttccacacctattccattctttggaatcc 455
|| | |||||||| |||||| |||||||| |||||||||||||| ||||||||
Sbjct: 125 atctctggttcgatccaactgtggatttccatacctattccattctctggaatcc 179