Jatropha Genome Database

JcCB0097621.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0097621.10 + phase: 1 /pseudo/partial
         (379 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268517039|gb|FM892591.1|FM892591 FM892591 Jatropha curcas emb...    72   5e-13

>gi|268517039|gb|FM892591.1|FM892591 FM892591 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003186,
           mRNA sequence
          Length = 556

 Score = 71.9 bits (36), Expect = 5e-13
 Identities = 84/100 (84%)
 Strand = Plus / Minus

                                                                       
Query: 188 tgaagttcctgtaagaagcagtgaagggagcttgactccaatctgtcttcacaagaccac 247
           |||| |||||| |||| |||||||| ||||| |  ||||||||||| || |  |  || |
Sbjct: 379 tgaaattcctgaaagatgcagtgaaaggagcatatctccaatctgttttgatgacccccc 320

                                                   
Query: 248 ctcttgtagcccaatcatctgcattccacagacttgagta 287
           ||||||||||||||||||| |||||||||||||| |||||
Sbjct: 319 ctcttgtagcccaatcatcagcattccacagactggagta 280