Jatropha Genome Database

JcCB0095251.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0095251.10 - phase: 2 /partial
         (2005 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268524943|gb|FM896573.1|FM896573 FM896573 Jatropha curcas emb...   708   0.0  

>gi|268524943|gb|FM896573.1|FM896573 FM896573 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003820,
           mRNA sequence
          Length = 412

 Score =  708 bits (357), Expect = 0.0
 Identities = 405/413 (98%), Gaps = 6/413 (1%)
 Strand = Plus / Minus

                                                                       
Query: 290 gtgcaactgtctcaatatgttcctgcccttgaaaagcttgctactttaaggctgcttcag 349
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 412 gtgcaactgtctcaatatgttcctgcccttgaaaagctcgctactttaaggctgcttcag 353

                                                                       
Query: 350 caggtgtcacaggtgtatcagatgatgaaaattgagagtttatctcagatgatccccttt 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 caggtgtcacaggtgtatcagatgatgaaaattgagagtttatctcagatgatccccttt 293

                                                                       
Query: 410 cttgacttttctgttgtcgagaaaatttctgttgatgctgtgaaacataatttcttagct 469
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cttgacttgtctgttgtcgagaaaatttctgttgatgctgtgaaacataatttcttagct 233

                                                                       
Query: 470 atgaaagttgaacatacaaagggcgtcatattgtttaataatttgggtcttgaatctgat 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 atgaaagttgaacatacaaagggcgtcatattgtttaataatttgggtcttgaatctgat 173

                                                                       
Query: 530 ggactgcgagaccat-cttgcaatttttgcggaatccttaaataaagtgagggccttgat 588
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 172 ggactgcgagaccatccttgcaatttttgcggaatccttaaataaagtgagggcc-tgat 114

                                                                       
Query: 589 atatcctccagcaaagaaatcttcaaaa-ctaggtgagattttacctggattgggggaga 647
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 113 atatcctccagcaaagaaatcttcaaaatctaggtgagattttacctggattgggggaga 54

                                                                
Query: 648 -ttgtggataaggaacataaaagactgcttgctcggaaatcaattattgaaaa 699
            ||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 53  tttgtggataaggaacat-aaagactgcttgctcggaaatc-attattgaaaa 3