Jatropha Genome Database

JcCB0093811.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0093811.10 - phase: 0 
         (1329 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268517439|gb|FM889157.1|FM889157 FM889157 Jatropha curcas emb...   829   0.0  

>gi|268517439|gb|FM889157.1|FM889157 FM889157 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002745,
           mRNA sequence
          Length = 537

 Score =  829 bits (418), Expect = 0.0
 Identities = 516/538 (95%), Gaps = 13/538 (2%)
 Strand = Plus / Plus

                                                                       
Query: 219 caacgttacccacgcttcctatctactgcgctccggcgacctcaacttcttgtttactgc 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caacgttacccacgcttcctatctactgcgctccggcgacctcaacttcttgtttactgc 60

                                                                       
Query: 279 tccctactctccgtcaattgctgccatggagaatttatcaaacactgccacggcatcaat 338
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tccctaggctccgtcaattgctgccatggagaatttatcaaacactgccacggcatcaat 120

                                                                       
Query: 339 ccccaccttcaatcacgaagattgccgcaatttcaccgccaagcatgggcttgcagtccg 398
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 121 ccccaccttcaatcacgaagattgccgcaatttcaccgccaagcataggcttgcagtccg 180

                                                                       
Query: 399 agccatcgcattagaagtggaagacgctgtaa-ttgcattcaacactagtgtggctcacg 457
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 181 agccatcgcattagaagtggaagacgctgtaatttgcattcaacactagtgtggctcacg 240

                                                                       
Query: 458 gtgcccaaccctcggcagaacctatagcactggataatcgtgctgttgttgcagaagttc 517
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtgcccaaccctcggcacaaactatagcactggataatcgtgctgttgttgcagaagttc 300

                                                                       
Query: 518 atttatacggcgatgtcgttttgagatacattagttatt-acaactcaaa--ccctaa-t 573
           ||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||| |
Sbjct: 301 atttatacggcgatgtcgttttgagatacattagttattaacaactcaaaacccctaatt 360

                                                                       
Query: 574 gatga--tcatgatt--ggtttctg--ccaaaatttg-aagcaatggatgaatcgtcatc 626
           |||||   |||||||  ||||||||  ||||| |||| ||||||||||||||||||||||
Sbjct: 361 gatgaatccatgatttgggtttctggcccaaattttgaaagcaatggatgaatcgtcatc 420

                                                                       
Query: 627 attttcgttggattacggtattcggcgattagaccatgccgtcgggaacgtaccggaatt 686
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 421 attttcgttggattacggtattcggcgattaaaccatgccgtcgggaacgtaccggaatt 480

                                                                     
Query: 687 agcccccgctgtttcttatgtgaaagcgttcaccggtttccatgaatttgctgagttc 744
           || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 481 ag-ccccgctgtttcttatgtgaaagcgttccccggtttccatgaatttgctgagttc 537