Jatropha Genome Database

JcCB0091711.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0091711.10 - phase: 0 /partial
         (777 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268522575|gb|FM896560.1|FM896560 FM896560 Jatropha curcas emb...   557   e-159
gi|268517539|gb|FM889250.1|FM889250 FM889250 Jatropha curcas emb...    82   1e-15

>gi|268522575|gb|FM896560.1|FM896560 FM896560 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003802,
           mRNA sequence
          Length = 329

 Score =  557 bits (281), Expect = e-159
 Identities = 320/329 (97%), Gaps = 3/329 (0%)
 Strand = Plus / Plus

                                                                       
Query: 429 gtctgaatatgctcaccctgctgagatactgttccttggttttgctactattattggtcc 488
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2   gtctgaatatgctcaccctgctgagatactgt-ccttggttttgctactattattggtcc 60

                                                                       
Query: 489 tgccatcactggtccccatctgataacgttgtggttatggatgatgcttagagtcctaga 548
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 61  tgccatcactggtccccatctgataacgttgtggttatggatgatgcttagagtactaga 120

                                                                       
Query: 549 gacagttgaagcacattgtggttaccactt-cccatggagtctttcaaatttcatac-ca 606
           |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||
Sbjct: 121 gacagttgaagcacattgtggttaccacttacccatggagtctttcgaatttcatacaca 180

                                                                       
Query: 607 ttgtatgggggtgctgattttcatgactatcaccaccgcttgctatatactaaatctgga 666
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 181 atgtatgggggtgctgattttcatgactatcagcaccgcttgctatatactaaatctgga 240

                                                                       
Query: 667 aactactcatctactttcatctatatggactggatttttggcaccgataaaggttacaga 726
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 241 aactactcatctactttcatctatatggactggatttaaggcaccgataaaggttacaga 300

                                        
Query: 727 aagttgaaagcactgaagactgatggagt 755
           |||||||||||||||||||||||||||||
Sbjct: 301 aagttgaaagcactgaagactgatggagt 329


>gi|268517539|gb|FM889250.1|FM889250 FM889250 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002858,
           mRNA sequence
          Length = 214

 Score = 81.8 bits (41), Expect = 1e-15
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 737 cactgaagactgatggagttgaagatggcagcaagcaaatg 777
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cactgaagactgatggagttgaagatggcagcaagcaaatg 41