Jatropha Genome Database

JcCB0086771.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0086771.10 - phase: 1 /pseudo/partial
         (1247 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268516477|gb|FM889637.1|FM889637 FM889637 Jatropha curcas emb...   232   8e-61
gi|268519135|gb|FM887602.1|FM887602 FM887602 Jatropha curcas emb...   107   3e-23

>gi|268516477|gb|FM889637.1|FM889637 FM889637 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003343,
            mRNA sequence
          Length = 545

 Score =  232 bits (117), Expect = 8e-61
 Identities = 123/125 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1123 ttcaaatattagttgattcagttccaactgcaaaactctctcttggatcagtagcaacag 1182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545  ttcaaatattagttgattcagttccaactgcaaaactctctcttggatcagtagcaacag 486

                                                                        
Query: 1183 taaacaatctaattaagtgcacagttgaaaggatcaaggctgcagtatccagtgataata 1242
            || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485  tatactatctaattaagtgcacagttgaaaggatcaaggctgcagtatccagtgataata 426

                 
Query: 1243 atgca 1247
            |||||
Sbjct: 425  atgca 421


>gi|268519135|gb|FM887602.1|FM887602 FM887602 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000836,
            mRNA sequence
          Length = 474

 Score =  107 bits (54), Expect = 3e-23
 Identities = 57/58 (98%)
 Strand = Plus / Minus

                                                                      
Query: 1190 tctaattaagtgcacagttgaaaggatcaaggctgcagtatccagtgataataatgca 1247
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 474  tctaattaagtgcacagtcgaaaggatcaaggctgcagtatccagtgataataatgca 417