Jatropha Genome Database

JcCB0084971.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0084971.10 + phase: 0 /pseudo/partial
         (555 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268522828|gb|FM896271.1|FM896271 FM896271 Jatropha curcas emb...   498   e-141

>gi|268522828|gb|FM896271.1|FM896271 FM896271 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003461,
           mRNA sequence
          Length = 495

 Score =  498 bits (251), Expect = e-141
 Identities = 305/323 (94%)
 Strand = Plus / Plus

                                                                       
Query: 233 cagaagtaaacaggaacatagatactgatttaattgttgctgaggttcgagagacaagtc 292
           ||||||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||
Sbjct: 1   cagaagtaaacaggaacattgatacggatgtcattgttgctgaggttcgagagacaagtc 60

                                                                       
Query: 293 gttagccagacgagatgtaccctgtgctggagaggataagtccaaggacaagaacgctgg 352
           || ||||||| |||||||||||| ||||||||||||| |||||||||||||||| |||||
Sbjct: 61  gtaagccagatgagatgtaccctatgctggagaggatcagtccaaggacaagaaagctgg 120

                                                                       
Query: 353 aattgtttgctcgcatgcataatactcatgctgggtggatgtcacttggtaatcaattgg 412
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aattgtttgctcgtatgcataatactcatgctgggtggatgtcacttggtaatcaattgg 180

                                                                       
Query: 413 ggggagtccgactggtagatgaaggcctgcgagccagatttaaggctgcttacccagatg 472
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agggagtgcgactggtagatgaaggcctgcgagccagatttaaggctgcttacccagatg 240

                                                                       
Query: 473 ttgtggtgcaatctccctctcctccgtgggcgtctgccatggagatagattctactgcat 532
           ||||||| ||| |||||||||||||  |||| ||||||||||| ||||||||||||||||
Sbjct: 241 ttgtggtccaacctccctctcctccacgggcatctgccatggaaatagattctactgcat 300

                                  
Query: 533 ctcaaatgaggagtccttttgcg 555
           |||||||||||||||||||||||
Sbjct: 301 ctcaaatgaggagtccttttgcg 323