Jatropha Genome Database

JcCB0083701.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0083701.20 - phase: 2 /pseudo/partial
         (523 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268524503|gb|FM895183.1|FM895183 FM895183 Jatropha curcas emb...   145   6e-35

>gi|268524503|gb|FM895183.1|FM895183 FM895183 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_001964,
           mRNA sequence
          Length = 163

 Score =  145 bits (73), Expect = 6e-35
 Identities = 114/125 (91%), Gaps = 2/125 (1%)
 Strand = Plus / Plus

                                                                       
Query: 367 agctggggagggaag-aatgtacacacaattgtcgaaagatgttgtaactgaaggagat- 424
           ||||||||| ||||| ||||||||||||||||||||||||||| ||| ||||||||||| 
Sbjct: 39  agctggggacggaagcaatgtacacacaattgtcgaaagatgtcgtacctgaaggagatc 98

                                                                       
Query: 425 gtcctgttcgcacctgccaacacagaggttactataacaaccacatctgagctgtgcctg 484
           ||||||||| |||||||| || || ||||||||||||||||||||||||| | |||||||
Sbjct: 99  gtcctgttctcacctgcctacgcataggttactataacaaccacatctgaacggtgcctg 158

                
Query: 485 tatag 489
           |||||
Sbjct: 159 tatag 163