Jatropha Genome Database

JcCB0082241.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0082241.10 + phase: 0 /pseudo/partial
         (729 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268524561|gb|FM895241.1|FM895241 FM895241 Jatropha curcas emb...   113   3e-25

>gi|268524561|gb|FM895241.1|FM895241 FM895241 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002033,
           mRNA sequence
          Length = 643

 Score =  113 bits (57), Expect = 3e-25
 Identities = 150/181 (82%)
 Strand = Plus / Minus

                                                                       
Query: 397 aacaggatttgctgggctttctgtgtttatctggaagctgtttcagtattgcctcagctt 456
           ||||||||||  ||||| || ||||| |||||||||||||| || ||| | |||||| | 
Sbjct: 537 aacaggattttgtgggcgttttgtgtatatctggaagctgtctctgtactacctcagttg 478

                                                                       
Query: 457 cgggtcatgcagaacacaaagattgttgaacctttcacagcacattatgtatttgcactc 516
           || || |||||||| ||||||||||||||||| || ||||| ||||||||||||||| | 
Sbjct: 477 cgagttatgcagaatacaaagattgttgaaccatttacagcgcattatgtatttgcattg 418

                                                                       
Query: 517 ggagtagcgagattcttgaattgtgcacattgggtgctgcaggtgttggatactcgagga 576
           || || || || |||||||  ||||| |||||||| || ||||| || |||||||| |||
Sbjct: 417 ggtgttgcaaggttcttgagctgtgcccattgggttctccaggttttagatactcgcgga 358

            
Query: 577 c 577
           |
Sbjct: 357 c 357