Jatropha Genome Database
- JcCB0078661.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0078661.20 - phase: 0
(528 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268525903|gb|FM891159.1|FM891159 FM891159 Jatropha curcas emb... 615 e-176
gi|268526015|gb|FM891271.1|FM891271 FM891271 Jatropha curcas emb... 422 e-118
gi|268522128|gb|FM892968.1|FM892968 FM892968 Jatropha curcas emb... 208 5e-54
gi|268520330|gb|FM890178.1|FM890178 FM890178 Jatropha curcas emb... 174 6e-44
>gi|268525903|gb|FM891159.1|FM891159 FM891159 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb1_001149,
mRNA sequence
Length = 518
Score = 615 bits (310), Expect = e-176
Identities = 313/314 (99%)
Strand = Plus / Plus
Query: 1 atggctgatttaagagatgaatatggcaatccaattcaacttaccgatgaacatggaaat 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 27 atggctgatttaagagatgaatatggcaatccaattcgacttaccgatgaacatggaaat 86
Query: 61 ccagttgaattgaccgatgaacatggcaacccagtgcatataactggcctagctacctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 ccagttgaattgaccgatgaacatggcaacccagtgcatataactggcctagctacctct 146
Query: 121 aagcctgcaaccattgcaaatgttctgcagatcgatgtgccggatactggccttttggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 aagcctgcaaccattgcaaatgttctgcagatcgatgtgccggatactggccttttggct 206
Query: 181 agtacggaggagccaccaaagggccacactggcgagcatgtaggtggtgctgaacctgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 agtacggaggagccaccaaagggccacactggcgagcatgtaggtggtgctgaacctgag 266
Query: 241 cccgtgaaagcggagcaaccgcaacaacaacaacaagaacttgaaagatctagtagttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cccgtgaaagcggagcaaccgcaacaacaacaacaagaacttgaaagatctagtagttca 326
Query: 301 agctctagctcgtc 314
||||||||||||||
Sbjct: 327 agctctagctcgtc 340
Score = 210 bits (106), Expect = 1e-54
Identities = 112/114 (98%)
Strand = Plus / Plus
Query: 379 ctgacaggtgggaagcacaaggaagagcataaacagacagcaatcactgaaacaacccca 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 405 ctgacaggtgggaagcacaaggaagagcataaacagacagcaatcactgaaacaaaccca 464
Query: 439 ggggatcctcaacaccatcaacatgagaagaagagtgtaatggagaagataaaa 492
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gaggatcctcaacaccatcaacatgagaagaagagtgtaatggagaagataaaa 518
>gi|268526015|gb|FM891271.1|FM891271 FM891271 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_001406,
mRNA sequence
Length = 416
Score = 422 bits (213), Expect = e-118
Identities = 213/213 (100%)
Strand = Plus / Plus
Query: 102 aactggcctagctacctctaagcctgcaaccattgcaaatgttctgcagatcgatgtgcc 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 aactggcctagctacctctaagcctgcaaccattgcaaatgttctgcagatcgatgtgcc 64
Query: 162 ggatactggccttttggctagtacggaggagccaccaaagggccacactggcgagcatgt 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 ggatactggccttttggctagtacggaggagccaccaaagggccacactggcgagcatgt 124
Query: 222 aggtggtgctgaacctgagcccgtgaaagcggagcaaccgcaacaacaacaacaagaact 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aggtggtgctgaacctgagcccgtgaaagcggagcaaccgcaacaacaacaacaagaact 184
Query: 282 tgaaagatctagtagttcaagctctagctcgtc 314
|||||||||||||||||||||||||||||||||
Sbjct: 185 tgaaagatctagtagttcaagctctagctcgtc 217
Score = 268 bits (135), Expect = 6e-72
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 379 ctgacaggtgggaagcacaaggaagagcataaacagacagcaatcactgaaacaacccca 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ctgacaggtgggaagcacaaggaagagcataaacagacagcaatcactgaaacaacccca 341
Query: 439 ggggatcctcaacaccatcaacatgagaagaagagtgtaatggagaagataaaagagaag 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ggggatcctcaacaccatcaacatgagaagaagagtgtaatggagaagataaaagagaag 401
Query: 499 ttgcctggccaccac 513
|||||||||||||||
Sbjct: 402 ttgcctggccaccac 416
>gi|268522128|gb|FM892968.1|FM892968 FM892968 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb1_003656,
mRNA sequence
Length = 372
Score = 208 bits (105), Expect = 5e-54
Identities = 149/163 (91%), Gaps = 13/163 (7%)
Strand = Plus / Plus
Query: 379 ctgacaggtgggaagcacaaggaagagcataaacagacagcaatcactgaaacaac---- 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 ctgacaggtgggaagcacaaggaagagcataaacagacagcaatcactgaaacaacacag 156
Query: 435 -ccc-----agggg---atcctcaacaccatcaacatgagaagaagagtgtaatggagaa 485
||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ccccnaaagagggcgaaatcctcaacaccatcaacatgagaagaagagtgtaatggagaa 216
Query: 486 gataaaagagaagttgcctggccaccacagtcacaaccactaa 528
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gataaaagagaagttgcctggccaccacagtcacaaccactaa 259
Score = 56.0 bits (28), Expect = 4e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 287 gatctagtagttcaagctctagctcgtc 314
||||||||||||||||||||||||||||
Sbjct: 5 gatctagtagttcaagctctagctcgtc 32
>gi|268520330|gb|FM890178.1|FM890178 FM890178 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003983,
mRNA sequence
Length = 309
Score = 174 bits (88), Expect = 6e-44
Identities = 97/99 (97%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 431 caaccccagggga-tcctcaacaccatcaacatgagaagaagagtgtaatggagaagata 489
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caaccccagnggaatcctcaacaccatcaacatgagaagaagagtgtaatggagaagata 60
Query: 490 aaagagaagttgcctggccaccacagtcacaaccactaa 528
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaagagaagttgcctggccaccacagtcacaaccactaa 99