Jatropha Genome Database

JcCB0077571.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0077571.20 - phase: 1 /partial
         (941 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268525355|gb|FM895997.1|FM895997 FM895997 Jatropha curcas emb...   339   3e-93

>gi|268525355|gb|FM895997.1|FM895997 FM895997 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003123,
           mRNA sequence
          Length = 507

 Score =  339 bits (171), Expect = 3e-93
 Identities = 203/219 (92%)
 Strand = Plus / Minus

                                                                       
Query: 723 gatgattgggagataggggtaagggttgtgccaaatgaagaaggaatagtagaaggtgag 782
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gatgattgggagataggggtaagggttgtgccaaatgaagaaggaatagtagaaggtgag 448

                                                                       
Query: 783 gagataacaaggtgtttagacttggttatgggagatggagagaaaggaaaagatgtaagn 842
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 447 gagataacaaggtgtttagacttggttatgggagatggagagaaaggaaaagatgtaaga 388

                                                                       
Query: 843 nnnnnnnnnnnnnnntggaaggatttggcgagagaagctgtcaaggaaagtgggtcttcg 902
                          |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaaaatgctaaaaaatggaaggatttggcgagagaagctgtcaaggaaagtgggtcttcg 328

                                                  
Query: 903 gataagaatcttaaggctttcgttgatgaggttttgtct 941
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gataagaatcttaaggctttcgttgatgaggttttgtct 289