Jatropha Genome Database
- JcCB0077031.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0077031.10 - phase: 0 /TE
(3444 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268518791|gb|FM889034.1|FM889034 FM889034 Jatropha curcas emb... 545 e-154
gi|268518200|gb|FM888474.1|FM888474 FM888474 Jatropha curcas emb... 509 e-144
gi|268519952|gb|FM889800.1|FM889800 FM889800 Jatropha curcas emb... 182 2e-45
gi|268518825|gb|FM889068.1|FM889068 FM889068 Jatropha curcas emb... 121 6e-27
>gi|268518791|gb|FM889034.1|FM889034 FM889034 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002587,
mRNA sequence
Length = 563
Score = 545 bits (275), Expect = e-154
Identities = 382/415 (92%), Gaps = 2/415 (0%)
Strand = Plus / Plus
Query: 1584 caatttttaaacttggttgagcgacagacaggcaaaaagctgaagtgcatcagaacagat 1643
|||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 116 caatttctaaacttggttgagcgacaaacgggcaagaagctgaagtgcatcagaacagat 175
Query: 1644 aatggtggagaatacactgggccatttgatgctttctgcaaagagcatggtattcgacat 1703
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 176 aatggtggagaatacactgggccatttgatactttctgcaaagagcatggtattcgacat 235
Query: 1704 caaacaacacctcccaagacgcagcaactgaatggtttggctaagaggatgaacagaact 1763
|||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||
Sbjct: 236 caaacaacacctcccaagacgccgcaactgaatggtttggctgagaggatgaatagaact 295
Query: 1764 ttgatggagaaagtcagatgtctactctcacatgcaaagttgtctaaaagatttt-gggg 1822
| | ||||| |||||||||| || ||||||||| |||||||||||||||||||| ||||
Sbjct: 296 taaacggagagagtcagatgtttattctcacatgtaaagttgtctaaaagattttggggg 355
Query: 1823 tgaagctcttcttacagcagttcatcttacaaatcggtcggcttgtgttcctctacagta 1882
||||||||||||||||||||||||||||| |||||| || ||||||||||||| |||||
Sbjct: 356 tgaagctcttcttacagcagttcatcttataaatcgttcaccttgtgttcctcttcagta 415
Query: 1883 tgatactccagaaagagtgtggtcaggaaaggatgtttcctatgatcatttgcgggtgtt 1942
||||| |||| ||||||| |||||||||||| |||||||||||||| | |||| |||||
Sbjct: 416 tgataatccacaaagagtatggtcaggaaagaatgtttcctatgattacttgcaggtgta 475
Query: 1943 tggctgcaaagtc-ttcgtgcatattcctaaggatgagaggtctaagcttgatgt 1996
||| ||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tggttgcaaaggcatttgtgcatattcctaaggatgagaggtctaagcttgatgt 530
>gi|268518200|gb|FM888474.1|FM888474 FM888474 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001895,
mRNA sequence
Length = 495
Score = 509 bits (257), Expect = e-144
Identities = 400/452 (88%), Gaps = 10/452 (2%)
Strand = Plus / Plus
Query: 2993 gtttttgctttatatggttgatatggtgactgttggtcagaattctagcttgaagaaaca 3052
||||||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 1 gtttttgctctatgtggttgatatattgattgttggtcagaattctagcttgaagaaaca 60
Query: 3053 gcttagtaagtcttttgctatgaaagacttgggaccagcnnnnnnnnttcttggcatgaa 3112
||| ||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 61 gctaagtaagtcttttgctatgaaagacttgggaccagcaaagcaaattcttggcataaa 120
Query: 3113 gattacaagaaattgaagaaccaagaaattatgtttgtcacaagagaagtacattgagaa 3172
||| | |||| ||||||||||||| |||||||| |||||||||||||||||
Sbjct: 121 gatca----------aagagccaagaaattatggttgtcacaggagaagtacattgagaa 170
Query: 3173 agtacttcaaaggtttagaatggagaatgctaaagcggttagttgtcctcttactaatca 3232
|||||||||||||||||||||||| || |||||||| ||||||| |||||||| |||| |
Sbjct: 171 agtacttcaaaggtttagaatggaaaacgctaaagctgttagttatcctcttaataataa 230
Query: 3233 ctttaaattgagttctaaacagtgcccttctacggatggagagaaggaagaaaaggaaaa 3292
||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||
Sbjct: 231 ctttaaattgagttctaaatagtgtccttctagggatggagagaaggaagaaaaggaaaa 290
Query: 3293 ggtttcatatgcttcagcagttggaagcttgatgaatgtcatggtttgtacacggccaga 3352
| || |||||||||||||||||| ||||||||||||| ||||| ||||||||| || |||
Sbjct: 291 gattccatatgcttcagcagttgaaagcttgatgaatatcatgatttgtacacagctaga 350
Query: 3353 tattgctcacccagttacagtagtgagtcggtttctttcaaatcctggaaagaaacattg 3412
|||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 351 tattgctcactcagttagagtagtgagtcggtttctttcaaatcctagaaagaaacattg 410
Query: 3413 tactgtagtaaaatggattttcaggatatcca 3444
|||| ||| ||||||||||||| ||||||||
Sbjct: 411 gactgcagtgaaatggattttcatgatatcca 442
>gi|268519952|gb|FM889800.1|FM889800 FM889800 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003537,
mRNA sequence
Length = 557
Score = 182 bits (92), Expect = 2e-45
Identities = 319/397 (80%), Gaps = 22/397 (5%)
Strand = Plus / Plus
Query: 1739 tttggctaagaggatgaacagaactttgatggagaaagtcagatgtctactctcacatgc 1798
||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 169 tttggctgagaggatgaacagaactttgatggagagagtcagatgtgtactctcacatgc 228
Query: 1799 aaagttgtctaaaagattttggggtgaagctcttcttacagcagttcatcttacaaatcg 1858
|||||||||||| |||||||||||| ||||| | ||||||| |||| ||||
Sbjct: 229 aaagttgtctaagagattttggggtaaagctttacttacagtagtt---------tatcg 279
Query: 1859 gtcggcttgtgttcctctacagtatgatactcc--agaaagagtgtggtcaggaaaggat 1916
|| | ||| | |||||||||||||||||||| ||| ||||| |||| |||||| |||
Sbjct: 280 ttcaccctgtttccctctacagtatgatactccagagagagagtatggttaggaaatgat 339
Query: 1917 gtttcctatgatcatttgcgggtgtttggctgcaaagtcttcgtgcatattcctaaggat 1976
|| ||||||||||||||||||||||||| || |||| |||||| ||| | | ||||||
Sbjct: 340 gtatcctatgatcatttgcgggtgtttgattgtaaagccttcgtacatgtcctgaaggat 399
Query: 1977 gagaggtctaagcttgatgt-----------aatgtgtattcattagctatggccaagat 2025
|| |||| ||||||||||| | |||||||||||| | ||||||| |||
Sbjct: 400 gaacggtcgaagcttgatgttcagactagacagtgtgtattcattggttatggcccagac 459
Query: 2026 caatttggttatagattttttgattcaatccagaaaaagatgataagaagtagagatgtt 2085
|||||||| |||| |||| ||| |||||| || | || ||||||| | | || |||
Sbjct: 460 caatttggctataagttttatgacccaatcccaaagacaattataagaaatcgtgaagtt 519
Query: 2086 gtttttgttgaaaatcagactattgaagatgttgaaa 2122
|| |||||||||||| |||||||||||||| ||||||
Sbjct: 520 gtatttgttgaaaattagactattgaagatattgaaa 556
>gi|268518825|gb|FM889068.1|FM889068 FM889068 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002630,
mRNA sequence
Length = 509
Score = 121 bits (61), Expect = 6e-27
Identities = 121/141 (85%), Gaps = 5/141 (3%)
Strand = Plus / Minus
Query: 22 atgatcagtctaaatggcgcaaattaccatatatggagaaataaaatgagagatctcctt 81
||||||| ||||||||||| ||||||||||||||||||||| | || ||||||||
Sbjct: 509 atgatcaatctaaatggcgggaattaccatatatggagaaattatat-----atctcctt 455
Query: 82 atggtaaccaaaatgcatttgcccgtgtttggttgaagcaaaccggaagacaagactgat 141
|||||| ||||||| ||||||| |||||| ||| || |||||||||||||||||||||
Sbjct: 454 atggtactcaaaatgtatttgcctgtgtttagttcaactaaaccggaagacaagactgat 395
Query: 142 gaagaatgggctttcgagcat 162
|| |||| |||||||||||||
Sbjct: 394 gaggaataggctttcgagcat 374
Score = 69.9 bits (35), Expect = 2e-11
Identities = 72/83 (86%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 1190 aaagttgtacatgatgcatgcgaagctctcccaagatactttaaatgtag-cggaggatg 1248
|||| ||||| ||||||||||| | |||| |||||| ||||| | ||||| | ||| |||
Sbjct: 266 aaagatgtacgtgatgcatgcgtaactcttccaagacactttgagtgtagtcagagaatg 207
Query: 1249 acagtacagttgaattgtggcat 1271
|||||||||||||||||||||||
Sbjct: 206 acagtacagttgaattgtggcat 184