Jatropha Genome Database

JcCB0075441.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0075441.10 - phase: 0 /partial
         (1413 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268523916|gb|FM890602.1|FM890602 FM890602 Jatropha curcas emb...   155   2e-37

>gi|268523916|gb|FM890602.1|FM890602 FM890602 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_000496,
           mRNA sequence
          Length = 480

 Score =  155 bits (78), Expect = 2e-37
 Identities = 219/266 (82%)
 Strand = Plus / Minus

                                                                       
Query: 727 gtggatgcagccagtgggggattcattgcaccatttttgtggccagagcttgaatgggac 786
           ||||||||||||||||| || || ||||| |||||  | |  ||||| ||||||||||| 
Sbjct: 335 gtggatgcagccagtggagggtttattgctccattcctttacccagatcttgaatgggat 276

                                                                       
Query: 787 tttagacttccattggtgaagagtattaatgttagtggacacaaatatgggcttgtctat 846
           ||| | || |||||||||||||| |||||||| || || ||||| ||||| || || |||
Sbjct: 275 tttcgtctgccattggtgaagagcattaatgtcagcggtcacaagtatggcctcgtttat 216

                                                                       
Query: 847 gctggtgttgggtgggttatttggaggagcaaagaagatttgcctgaagaactcattttt 906
           ||||||||||| |||| | |||||||||  || ||||| ||||| || || || || |||
Sbjct: 215 gctggtgttggttgggctgtttggaggactaaggaagacttgccagaggagcttatcttt 156

                                                                       
Query: 907 catattaactatcttggaactgatcaacccactttcactctcaatttttcgaaaggttca 966
           || |||||||| |||||  ||||||||||||||||||| ||||| || || ||||| || 
Sbjct: 155 cacattaactaccttggctctgatcaacccactttcacactcaacttctcaaaaggctct 96

                                     
Query: 967 agccaaatcattgctcaatattatca 992
           || ||||| ||||| |||||||||||
Sbjct: 95  agtcaaataattgcacaatattatca 70