Jatropha Genome Database

JcCB0067191.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0067191.10 + phase: 0 /pseudo/partial
         (699 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268525157|gb|FM895799.1|FM895799 FM895799 Jatropha curcas emb...   359   3e-99

>gi|268525157|gb|FM895799.1|FM895799 FM895799 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002788,
           mRNA sequence
          Length = 590

 Score =  359 bits (181), Expect = 3e-99
 Identities = 381/445 (85%), Gaps = 2/445 (0%)
 Strand = Plus / Plus

                                                                       
Query: 234 cctctttctccaatgggtgatgcatgttcacgaatggatctcacagctatccatcagatc 293
           ||||| || ||||||||||| || |||||||| |||||||||||||| || |||||||||
Sbjct: 6   cctctctcaccaatgggtgaggcctgttcacggatggatctcacagcaattcatcagatc 65

                                                                       
Query: 294 ttggtcatgacgcactacaaggatgatgaaggaacaaatgagctatcattccaagagtgg 353
           ||||| ||||| || || || |||||||| ||||| |||||| |||| |||||||| |||
Sbjct: 66  ttggttatgacacattataaagatgatgagggaacgaatgagttatctttccaagaatgg 125

                                                                       
Query: 354 acccaacaaatgagagatatg-tggaggcaagaaagcgtggagacgtagcatttcgtgac 412
           || |||||||||||||||||| ||||| |||| || || || ||| | ||||| ||||| 
Sbjct: 126 acacaacaaatgagagatatgctggagtcaaggaaacgaggggactttgcattccgtgat 185

                                                                       
Query: 413 aaagagtt-aaaactgcaatagagtgtatttctcagttcatagatgtcggaacaatggtt 471
           ||||| || |||||||| || || |||  ||| ||||||||||| || ||||||||||||
Sbjct: 186 aaagattttaaaactgccattgactgttattcccagttcatagacgtaggaacaatggtt 245

                                                                       
Query: 472 tctccaactgtttatgcacggagaagtctttgctatcttttatgtgatcaaccagatgct 531
           ||||||||||||| ||||||| | |||||||| ||||||||||| ||||||||||| || 
Sbjct: 246 tctccaactgtttttgcacggcgcagtctttgttatcttttatgcgatcaaccagacgcc 305

                                                                       
Query: 532 gccctccgagatgctatgcaagcacaatgtgtataccctgaatggtctacagcattttac 591
           ||||| |||||||| |||||||||||||||||||| || || ||| | ||||| ||||||
Sbjct: 306 gcccttcgagatgcaatgcaagcacaatgtgtatatccggagtggccaacagccttttac 365

                                                                       
Query: 592 atgcaagcagtcgcccttgccaagctagatatgcataaagatgcaactgacatgttgaat 651
           |||||  |||| ||||||||||| ||||| |||||||| |||||  | ||||||||||||
Sbjct: 366 atgcagtcagttgcccttgccaaactagacatgcataatgatgccgccgacatgttgaat 425

                                    
Query: 652 gaggctgctgccctagaagaaaaaa 676
           || |||||||| |||||||||||||
Sbjct: 426 gaagctgctgcactagaagaaaaaa 450