Jatropha Genome Database
- JcCB0065971.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0065971.10 + phase: 0
(489 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237681036|gb|GO247672.1|GO247672 JcrME_RL1216 Expressed seque... 72 6e-13
gi|237680871|gb|GO247083.1|GO247083 JcrME_RL0627 Expressed seque... 54 2e-07
gi|262091272|gb|GT228699.1|GT228699 JC264 Jatropha seeds from fr... 54 2e-07
gi|268517203|gb|FM893551.1|FM893551 FM893551 Jatropha curcas emb... 54 2e-07
gi|268522600|gb|FM896641.1|FM896641 FM896641 Jatropha curcas emb... 54 2e-07
gi|268517110|gb|FM892662.1|FM892662 FM892662 Jatropha curcas emb... 48 9e-06
gi|268517829|gb|FM893204.1|FM893204 FM893204 Jatropha curcas emb... 48 9e-06
>gi|237681036|gb|GO247672.1|GO247672 JcrME_RL1216 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 201
Score = 71.9 bits (36), Expect = 6e-13
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 454 ggatgtggcattattggacttcactcatctgtttag 489
||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggatgtggcattattggacttcactcatctgtttag 166
>gi|237680871|gb|GO247083.1|GO247083 JcrME_RL0627 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 700
Score = 54.0 bits (27), Expect = 2e-07
Identities = 56/65 (86%), Gaps = 3/65 (4%)
Strand = Plus / Minus
Query: 361 agggctgttgttgtacatgctgatcctgacgatcttggaaaagcaggtggacatgaactt 420
||||| || |||||||||||||||||||| |||||||| || || ||||||||||||
Sbjct: 337 agggcagtcgttgtacatgctgatcctgatgatcttggcaa---gggaggacatgaactt 281
Query: 421 agcaa 425
|||||
Sbjct: 280 agcaa 276
>gi|262091272|gb|GT228699.1|GT228699 JC264 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone PL05SE.G03.scf 5', mRNA sequence
Length = 606
Score = 54.0 bits (27), Expect = 2e-07
Identities = 56/65 (86%), Gaps = 3/65 (4%)
Strand = Plus / Minus
Query: 361 agggctgttgttgtacatgctgatcctgacgatcttggaaaagcaggtggacatgaactt 420
||||| || |||||||||||||||||||| |||||||| || || ||||||||||||
Sbjct: 316 agggcagtcgttgtacatgctgatcctgatgatcttggcaa---gggaggacatgaactt 260
Query: 421 agcaa 425
|||||
Sbjct: 259 agcaa 255
>gi|268517203|gb|FM893551.1|FM893551 FM893551 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_004411,
mRNA sequence
Length = 540
Score = 54.0 bits (27), Expect = 2e-07
Identities = 56/65 (86%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 361 agggctgttgttgtacatgctgatcctgacgatcttggaaaagcaggtggacatgaactt 420
||||| || |||||||||||||||||||| |||||||| | | || ||||||||||||
Sbjct: 410 agggcagtcgttgtacatgctgatcctgatgatcttggca---cgggaggacatgaactt 466
Query: 421 agcaa 425
|||||
Sbjct: 467 agcaa 471
>gi|268522600|gb|FM896641.1|FM896641 FM896641 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003911,
mRNA sequence
Length = 580
Score = 54.0 bits (27), Expect = 2e-07
Identities = 56/65 (86%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 361 agggctgttgttgtacatgctgatcctgacgatcttggaaaagcaggtggacatgaactt 420
||||| || |||||||||||||||||||| |||||||| || || ||||||||||||
Sbjct: 378 agggcagtcgttgtacatgctgatcctgatgatcttggcaa---gggaggacatgaactt 434
Query: 421 agcaa 425
|||||
Sbjct: 435 agcaa 439
>gi|268517110|gb|FM892662.1|FM892662 FM892662 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003269,
mRNA sequence
Length = 584
Score = 48.1 bits (24), Expect = 9e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 168 tggtgacaccaccaatggctgcaattctactggacctcatttcaatcc 215
||||||||| || ||||| |||| |||||| ||| |||||||||||||
Sbjct: 373 tggtgacacaacaaatggatgcatttctacaggagctcatttcaatcc 420
>gi|268517829|gb|FM893204.1|FM893204 FM893204 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb1_003965,
mRNA sequence
Length = 657
Score = 48.1 bits (24), Expect = 9e-06
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 168 tggtgacaccaccaatggctgcaattctactggacctcatttcaatcc 215
||||||||| || ||||| |||| |||||| ||| |||||||||||||
Sbjct: 163 tggtgacacaacaaatggatgcatttctacaggagctcatttcaatcc 210