Jatropha Genome Database

JcCB0063661.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0063661.10 + phase: 0 
         (726 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|262090943|gb|GT229301.1|GT229301 JC866 Jatropha seeds from fr...    72   1e-12
gi|268521128|gb|FM891847.1|FM891847 FM891847 Jatropha curcas emb...    72   1e-12
gi|268521420|gb|FM894172.1|FM894172 FM894172 Jatropha curcas emb...    72   1e-12
gi|268525375|gb|FM896017.1|FM896017 FM896017 Jatropha curcas emb...    64   2e-10
gi|268517366|gb|FM887308.1|FM887308 FM887308 Jatropha curcas emb...    52   9e-07

>gi|262090943|gb|GT229301.1|GT229301 JC866 Jatropha seeds from
           fruits at three stages of maturation Jatropha curcas
           cDNA clone PL21SE.F09.scf 5', mRNA sequence
          Length = 465

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                       
Query: 565 tatgtgccaacctatgaagataaggatggtgactggatgctcgtgggcgatgttccatgg 624
           ||||||| ||| || || ||||||||||| || |||||||| || || ||||| ||||||
Sbjct: 410 tatgtgctaacatacgaggataaggatggcgattggatgcttgttggggatgtgccatgg 351

                                   
Query: 625 gagatgtttgttgattcatgcaag 648
           ||||||||| ||||| ||||||||
Sbjct: 350 gagatgtttattgatacatgcaag 327


>gi|268521128|gb|FM891847.1|FM891847 FM891847 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002241,
           mRNA sequence
          Length = 282

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 63/72 (87%)
 Strand = Plus / Plus

                                                                       
Query: 577 tatgaagataaggatggtgactggatgctcgtgggcgatgttccatgggagatgtttgtt 636
           ||||| ||||| |||||||| |||||||| || || ||||||||||||||||||||  ||
Sbjct: 50  tatgaggataaagatggtgattggatgcttgttggtgatgttccatgggagatgttcatt 109

                       
Query: 637 gattcatgcaag 648
           ||| ||||||||
Sbjct: 110 gatacatgcaag 121


>gi|268521420|gb|FM894172.1|FM894172 FM894172 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004362,
           mRNA sequence
          Length = 318

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 63/72 (87%)
 Strand = Plus / Minus

                                                                       
Query: 577 tatgaagataaggatggtgactggatgctcgtgggcgatgttccatgggagatgtttgtt 636
           ||||| ||||| |||||||| |||||||| || || ||||||||||||||||||||  ||
Sbjct: 201 tatgaggataaagatggtgattggatgcttgttggtgatgttccatgggagatgttcatt 142

                       
Query: 637 gattcatgcaag 648
           ||| ||||||||
Sbjct: 141 gatacatgcaag 130


>gi|268525375|gb|FM896017.1|FM896017 FM896017 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003146,
           mRNA sequence
          Length = 569

 Score = 63.9 bits (32), Expect = 2e-10
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                       
Query: 577 tatgaagataaggatggtgactggatgctcgtgggcgatgttccatgggagatgtttgtt 636
           ||||| ||||| |||| ||| |||||||| || || ||||||||||||||||||||  ||
Sbjct: 569 tatgaggataaagatgttgattggatgcttgttggtgatgttccatgggagatgttcatt 510

                       
Query: 637 gattcatgcaag 648
           ||| ||||||||
Sbjct: 509 gatacatgcaag 498


>gi|268517366|gb|FM887308.1|FM887308 FM887308 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000478,
           mRNA sequence
          Length = 438

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 598 tggatgctcgtgggcgatgttccatgggagatgtttgttgattcatgcaa 647
           |||||||| || || ||||||||||||||||||||  ||||| |||||||
Sbjct: 296 tggatgcttgttggtgatgttccatgggagatgttcattgatacatgcaa 247