Jatropha Genome Database
- JcCB0061321.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0061321.10 + phase: 0 /pseudo/partial
(300 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237680047|gb|GO247352.1|GO247352 JcrME_RL0896 Expressed seque... 176 9e-45
gi|268519888|gb|FM889736.1|FM889736 FM889736 Jatropha curcas emb... 172 1e-43
gi|237680059|gb|GO247364.1|GO247364 JcrME_RL0908 Expressed seque... 161 5e-40
gi|237680036|gb|GO247341.1|GO247341 JcrME_RL0885 Expressed seque... 98 7e-21
gi|237680039|gb|GO247344.1|GO247344 JcrME_RL0888 Expressed seque... 86 3e-17
gi|237680041|gb|GO247346.1|GO247346 JcrME_RL0890 Expressed seque... 86 3e-17
gi|237680045|gb|GO247350.1|GO247350 JcrME_RL0894 Expressed seque... 78 6e-15
gi|268516894|gb|FM892446.1|FM892446 FM892446 Jatropha curcas emb... 48 6e-06
gi|268517319|gb|FM887261.1|FM887261 FM887261 Jatropha curcas emb... 48 6e-06
gi|268517864|gb|FM893239.1|FM893239 FM893239 Jatropha curcas emb... 48 6e-06
gi|268519927|gb|FM889775.1|FM889775 FM889775 Jatropha curcas emb... 48 6e-06
gi|268521494|gb|FM894246.1|FM894246 FM894246 Jatropha curcas emb... 48 6e-06
gi|268522725|gb|FM896168.1|FM896168 FM896168 Jatropha curcas emb... 48 6e-06
gi|268522817|gb|FM896260.1|FM896260 FM896260 Jatropha curcas emb... 48 6e-06
gi|268524095|gb|FM894774.1|FM894774 FM894774 Jatropha curcas emb... 48 6e-06
gi|268524510|gb|FM895190.1|FM895190 FM895190 Jatropha curcas emb... 48 6e-06
gi|268524554|gb|FM895234.1|FM895234 FM895234 Jatropha curcas emb... 48 6e-06
>gi|237680047|gb|GO247352.1|GO247352 JcrME_RL0896 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 550
Score = 176 bits (89), Expect = 9e-45
Identities = 209/244 (85%), Gaps = 10/244 (4%)
Strand = Plus / Minus
Query: 55 tcttcactggcaggcagtttgaagatggccgaaccttggcggattacaatatccataaag 114
||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 445 tcttcgctggcaagcagcttgaagatggccgaaccttggcggattacaatatccagaaag 386
Query: 115 aatc---tctg--tcttgttttgagtcttagggaagggattgtaaatcatt-tatcatgg 168
|||| ||| |||||||||||| ||||||| |||||| || | | || | ||||||
Sbjct: 385 aatcgactcttcatcttgttttgaggcttaggggagggatcatagaaccttctctcatgg 326
Query: 169 ctttggctcgcaaatataatcaaagataagatgatttgtcgcaagtgct---ctcgtgta 225
| |||||||||||||| |||||| |||||||||||||| |||||||||| ||||| |
Sbjct: 325 cattggctcgcaaatacaatcaa-gataagatgatttgccgcaagtgctatgctcgtctg 267
Query: 226 catccatgggctgtaaattgctggaagaagaagtgcggccatagcagttagtggagatct 285
|||||| |||||||||||||| |||||||||||||||| ||||||| | ||| |||| ||
Sbjct: 266 catccaagggctgtaaattgccggaagaagaagtgcggtcatagcaatcagttgagacct 207
Query: 286 aaga 289
||||
Sbjct: 206 aaga 203
>gi|268519888|gb|FM889736.1|FM889736 FM889736 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003462,
mRNA sequence
Length = 543
Score = 172 bits (87), Expect = 1e-43
Identities = 209/245 (85%), Gaps = 11/245 (4%)
Strand = Plus / Minus
Query: 55 tcttcactggcaggcagtttgaagatggccgaaccttggcggattacaatatccataaag 114
||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 503 tcttcgctggcaagcagcttgaagatggccgaaccttggcggattacaatatccagaaag 444
Query: 115 aat----ctctg--tcttgttttgagtcttagggaagggattgtaaatcatt-tatcatg 167
||| |||| |||||||||||| ||||||| |||||| || | | || | |||||
Sbjct: 443 aattcgactcttcatcttgttttgaggcttaggggagggatcatagaaccttctctcatg 384
Query: 168 gctttggctcgcaaatataatcaaagataagatgatttgtcgcaagtgct---ctcgtgt 224
|| |||||||||||||| |||||| |||||||||||||| |||||||||| ||||| |
Sbjct: 383 gcattggctcgcaaatacaatcaa-gataagatgatttgccgcaagtgctatgctcgtct 325
Query: 225 acatccatgggctgtaaattgctggaagaagaagtgcggccatagcagttagtggagatc 284
|||||| |||||||||||||| |||||||||||||||| ||||||| | ||| |||| |
Sbjct: 324 gcatccaagggctgtaaattgccggaagaagaagtgcggtcatagcaatcagttgagacc 265
Query: 285 taaga 289
|||||
Sbjct: 264 taaga 260
>gi|237680059|gb|GO247364.1|GO247364 JcrME_RL0908 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 583
Score = 161 bits (81), Expect = 5e-40
Identities = 208/244 (85%), Gaps = 11/244 (4%)
Strand = Plus / Minus
Query: 55 tcttcactggcaggcagtttgaagatggccgaaccttggcggattacaatatccataaag 114
||||| |||||| |||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 472 tcttcgctggcaagcagcttgaagatggccgaaccttggcggattacaatatccagaaag 413
Query: 115 aatc---tctg--tcttgttttgagtcttagggaagggattgtaaatcatt-tatcatgg 168
|||| ||| |||||||| ||| ||||||| |||||| || | | || | ||||||
Sbjct: 412 aatcgactcttcatcttgttt-gaggcttaggggagggatcatagaaccttctctcatgg 354
Query: 169 ctttggctcgcaaatataatcaaagataagatgatttgtcgcaagtgct---ctcgtgta 225
| |||||||||||||| |||||| |||||||||||||| |||||||||| ||||| |
Sbjct: 353 cattggctcgcaaatacaatcaa-gataagatgatttgccgcaagtgctatgctcgtctg 295
Query: 226 catccatgggctgtaaattgctggaagaagaagtgcggccatagcagttagtggagatct 285
|||||| |||||||||||||| |||||||||||||||| ||||||| | ||| |||| ||
Sbjct: 294 catccaagggctgtaaattgccggaagaagaagtgcggtcatagcaatcagttgagacct 235
Query: 286 aaga 289
||||
Sbjct: 234 aaga 231
>gi|237680036|gb|GO247341.1|GO247341 JcrME_RL0885 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 455
Score = 97.6 bits (49), Expect = 7e-21
Identities = 112/130 (86%), Gaps = 6/130 (4%)
Strand = Plus / Minus
Query: 163 tcatggctttggctcgcaaatataatcaaagataagatgatttgtcgcaagtgct---ct 219
||||||| |||||||||||| | ||||| |||||||||||||| |||||||||| ||
Sbjct: 314 tcatggcattggctcgcaaa-acaatca--gataagatgatttgccgcaagtgctatgct 258
Query: 220 cgtgtacatccatgggctgtaaattgctggaagaagaagtgcggccatagcagttagtgg 279
||| | |||||| |||||||||||||| |||||||||||||||| ||||||| | ||| |
Sbjct: 257 cgtctgcatccaagggctgtaaattgccggaagaagaagtgcggtcatagcaatcagttg 198
Query: 280 agatctaaga 289
||| ||||||
Sbjct: 197 agacctaaga 188
>gi|237680039|gb|GO247344.1|GO247344 JcrME_RL0888 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 525
Score = 85.7 bits (43), Expect = 3e-17
Identities = 173/213 (81%), Gaps = 10/213 (4%)
Strand = Plus / Minus
Query: 68 gcagtttgaagatggccgaaccttggcggattacaatatccataaagaat-----ctctg 122
|||| |||||||||||||||| |||||||||||||||||||| ||||||| |||
Sbjct: 427 gcagcttgaagatggccgaactttggcggattacaatatccagaaagaatcaaccctcca 368
Query: 123 tcttgttttgagtcttagggaagggattgtaaatcatt-tatcatggctttggctcgcaa 181
|||||| ||||| ||||||| ||| ||| | | | || | | |||||||||||||||||
Sbjct: 367 tcttgtgttgaggcttaggggaggtattattgagccttctcttatggctttggctcgcaa 308
Query: 182 atataatcaaagataagatgatttgtcgcaagtgct---ctcgtgtacatccatgggctg 238
|||||||| | || ||||||||||| |||||||| | ||||| | ||||| ||||||
Sbjct: 307 atataatc-aggacaagatgatttgccgcaagtgttatgctcgtatgcatcctagggctg 249
Query: 239 taaattgctggaagaagaagtgcggccatagca 271
| || ||| |||||||||| || || |||||||
Sbjct: 248 tgaactgccggaagaagaaatgtgggcatagca 216
>gi|237680041|gb|GO247346.1|GO247346 JcrME_RL0890 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 572
Score = 85.7 bits (43), Expect = 3e-17
Identities = 173/213 (81%), Gaps = 10/213 (4%)
Strand = Plus / Minus
Query: 68 gcagtttgaagatggccgaaccttggcggattacaatatccataaagaat-----ctctg 122
|||| |||||||||||||||| |||||||||||||||||||| ||||||| |||
Sbjct: 455 gcagcttgaagatggccgaactttggcggattacaatatccagaaagaatcaaccctcca 396
Query: 123 tcttgttttgagtcttagggaagggattgtaaatcatt-tatcatggctttggctcgcaa 181
|||||| ||||| ||||||| ||| ||| | | | || | | |||||||||||||||||
Sbjct: 395 tcttgtgttgaggcttaggggaggtattattgagccttctcttatggctttggctcgcaa 336
Query: 182 atataatcaaagataagatgatttgtcgcaagtgct---ctcgtgtacatccatgggctg 238
|||||||| | || ||||||||||| |||||||| | ||||| | ||||| ||||||
Sbjct: 335 atataatc-aggacaagatgatttgccgcaagtgttatgctcgtctgcatcctagggctg 277
Query: 239 taaattgctggaagaagaagtgcggccatagca 271
| || ||| |||||||||| || || |||||||
Sbjct: 276 tgaactgccggaagaagaaatgtgggcatagca 244
>gi|237680045|gb|GO247350.1|GO247350 JcrME_RL0894 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 501
Score = 77.8 bits (39), Expect = 6e-15
Identities = 48/51 (94%)
Strand = Plus / Minus
Query: 68 gcagtttgaagatggccgaaccttggcggattacaatatccataaagaatc 118
|||| |||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 415 gcagcttgaagatggccgaactttggcggattacaatatccagaaagaatc 365
>gi|268516894|gb|FM892446.1|FM892446 FM892446 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003005,
mRNA sequence
Length = 529
Score = 48.1 bits (24), Expect = 6e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 75 gaagatggccgaaccttggcggattacaatat 106
|||||||||||||| ||||| |||||||||||
Sbjct: 45 gaagatggccgaactttggccgattacaatat 76
>gi|268517319|gb|FM887261.1|FM887261 FM887261 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000419,
mRNA sequence
Length = 594
Score = 48.1 bits (24), Expect = 6e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 75 gaagatggccgaaccttggcggattacaatat 106
|||||||||||||| ||||| |||||||||||
Sbjct: 491 gaagatggccgaactttggccgattacaatat 460
>gi|268517864|gb|FM893239.1|FM893239 FM893239 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb2_004017,
mRNA sequence
Length = 545
Score = 48.1 bits (24), Expect = 6e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 75 gaagatggccgaaccttggcggattacaatat 106
|||||||||||||| ||||| |||||||||||
Sbjct: 485 gaagatggccgaactttggccgattacaatat 454
>gi|268519927|gb|FM889775.1|FM889775 FM889775 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003510,
mRNA sequence
Length = 488
Score = 48.1 bits (24), Expect = 6e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 75 gaagatggccgaaccttggcggattacaatat 106
|||||||||||||| ||||| |||||||||||
Sbjct: 8 gaagatggccgaactttggccgattacaatat 39
>gi|268521494|gb|FM894246.1|FM894246 FM894246 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004551,
mRNA sequence
Length = 619
Score = 48.1 bits (24), Expect = 6e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 75 gaagatggccgaaccttggcggattacaatat 106
|||||||||||||| ||||| |||||||||||
Sbjct: 485 gaagatggccgaactttggccgattacaatat 454
>gi|268522725|gb|FM896168.1|FM896168 FM896168 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003335,
mRNA sequence
Length = 542
Score = 48.1 bits (24), Expect = 6e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 75 gaagatggccgaaccttggcggattacaatat 106
|||||||||||||| ||||| |||||||||||
Sbjct: 497 gaagatggccgaactttggccgattacaatat 466
>gi|268522817|gb|FM896260.1|FM896260 FM896260 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003450,
mRNA sequence
Length = 527
Score = 48.1 bits (24), Expect = 6e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 75 gaagatggccgaaccttggcggattacaatat 106
|||||||||||||| ||||| |||||||||||
Sbjct: 480 gaagatggccgaactttggccgattacaatat 449
>gi|268524095|gb|FM894774.1|FM894774 FM894774 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000642,
mRNA sequence
Length = 582
Score = 48.1 bits (24), Expect = 6e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 75 gaagatggccgaaccttggcggattacaatat 106
|||||||||||||| ||||| |||||||||||
Sbjct: 485 gaagatggccgaactttggccgattacaatat 454
>gi|268524510|gb|FM895190.1|FM895190 FM895190 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_001971,
mRNA sequence
Length = 608
Score = 48.1 bits (24), Expect = 6e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 75 gaagatggccgaaccttggcggattacaatat 106
|||||||||||||| ||||| |||||||||||
Sbjct: 486 gaagatggccgaactttggccgattacaatat 455
>gi|268524554|gb|FM895234.1|FM895234 FM895234 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002023,
mRNA sequence
Length = 542
Score = 48.1 bits (24), Expect = 6e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 75 gaagatggccgaaccttggcggattacaatat 106
|||||||||||||| ||||| |||||||||||
Sbjct: 485 gaagatggccgaactttggccgattacaatat 454