Jatropha Genome Database

JcCB0061171.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0061171.10 - phase: 0 
         (1065 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268519243|gb|FM887710.1|FM887710 FM887710 Jatropha curcas emb...   305   5e-83

>gi|268519243|gb|FM887710.1|FM887710 FM887710 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000961,
           mRNA sequence
          Length = 507

 Score =  305 bits (154), Expect = 5e-83
 Identities = 223/246 (90%)
 Strand = Plus / Minus

                                                                       
Query: 348 gattggaaatgcatggatagatcagaacaccggcttaaagggaacatatgattattactg 407
           |||||||||||||||||||||| |||| || ||| |||||||||||| ||||||||||||
Sbjct: 419 gattggaaatgcatggatagatgagaagacgggcataaagggaacatttgattattactg 360

                                                                       
Query: 408 gacacatgctctgaattctgatgaaacccatgcaggcataactaagtattgtgattttgt 467
           |||||||||||||||||||||  ||||||||||||||||||  |||||||||||||||||
Sbjct: 359 gacacatgctctgaattctgacaaaacccatgcaggcataaacaagtattgtgattttgt 300

                                                                       
Query: 468 tactggaaatttctcaaacatttgttatcaatatcaggacttgggcgacagagaaattgg 527
           ||||||||||||||||||||| ||| ||||||||||| |||| || ||| ||||||||||
Sbjct: 299 tactggaaatttctcaaacatctgtcatcaatatcagaacttaggtgacggagaaattgg 240

                                                                       
Query: 528 cgttattgacaattacaacatttatgcaccgctctgcgatcaatctaaactaaattctgt 587
           |  ||||||||||||||||||||| ||||| ||||| ||||||||| ||| |||||||| 
Sbjct: 239 caatattgacaattacaacatttacgcaccactctgagatcaatctgaacaaaattctgg 180

                 
Query: 588 atcaac 593
           ||||||
Sbjct: 179 atcaac 174



 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 72/84 (85%)
 Strand = Plus / Minus

                                                                       
Query: 603 caaagattttgatccctgctccagtaactatgtacactcgtatctaaatcttactgaggt 662
           ||||| ||||||||| ||||||  |||||||||| |||||||||| ||||||  ||||||
Sbjct: 94  caaaggttttgatccatgctccgataactatgtatactcgtatcttaatcttgatgaggt 35

                                   
Query: 663 gcaaaaggtccttcacgcaaagcc 686
           ||||| ||  ||||| ||||||||
Sbjct: 34  gcaaacggctcttcatgcaaagcc 11