Jatropha Genome Database

JcCB0060211.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0060211.10 + phase: 0 /partial
         (987 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268524941|gb|FM895639.1|FM895639 FM895639 Jatropha curcas emb...   113   4e-25

>gi|268524941|gb|FM895639.1|FM895639 FM895639 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002593,
           mRNA sequence
          Length = 530

 Score =  113 bits (57), Expect = 4e-25
 Identities = 297/377 (78%)
 Strand = Plus / Plus

                                                                       
Query: 217 aagacttaccgatactatgatcctgcaactcatgggctggattttcaaggattattggag 276
           ||||| ||||| ||||||||||| ||||| | |||||||||||| ||||| ||  | |||
Sbjct: 151 aagacgtaccggtactatgatccagcaacacgtgggctggatttccaaggcttgctagag 210

                                                                       
Query: 277 gatctcagttctgcaccatcaggagccattgtacttctccaagcatgtgggcacaaccct 336
           |||||  | ||||||||| ||||| |  | || |||||||| |||||||  || ||||| 
Sbjct: 211 gatctgggatctgcaccaacaggatctgtagtgcttctccatgcatgtgcacataaccca 270

                                                                       
Query: 337 acgggtgttgatccaactcttgagcaatgggagcatatcaggcagctaatgaggttaaaa 396
           || || ||||| ||||| |||||||| |||||||| ||||| ||||| || || | ||||
Sbjct: 271 actggcgttgacccaacccttgagcagtgggagcagatcagacagctgatcagatcaaaa 330

                                                                       
Query: 397 ggactgctacctttctttgattgtgcttatcagggctttgtaagtggaaatttggatatg 456
           | | |  | |||||||||||  ||||||||||||| ||||  ||||| |   | |||   
Sbjct: 331 gcatttttgcctttctttgacagtgcttatcagggttttgcgagtggcagcctagatgca 390

                                                                       
Query: 457 gatgctcaatcaattcgagtgtttgtggcagatggtggtgaatgccttgtagctcaatct 516
           ||||| ||  |  ||||  ||||||| | ||||||||||||||| |||||||| ||   |
Sbjct: 391 gatgcacagcctgttcggttgtttgttggagatggtggtgaatgtcttgtagcacagagt 450

                                                                       
Query: 517 tattcaaagatcatgggaatctatgcggaccgcgttggtgcacttagcattgtgtgcaag 576
           ||| |||| |  |||||| |||||| ||| || ||||| || || |||||||| ||||| 
Sbjct: 451 tatgcaaaaaatatgggactctatggggaacgtgttggggctctcagcattgtctgcaaa 510

                            
Query: 577 acagcagatgtggcgag 593
           |||||||||||||||||
Sbjct: 511 acagcagatgtggcgag 527