Jatropha Genome Database
- JcCB0059341.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0059341.10 + phase: 0 /partial
(285 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|237680303|gb|GO246487.1|GO246487 JcrME_RL0031 Expressed seque... 549 e-157
gi|237680683|gb|GO246895.1|GO246895 JcrME_RL0439 Expressed seque... 521 e-148
gi|237680721|gb|GO246872.1|GO246872 JcrME_RL0416 Expressed seque... 458 e-129
gi|268521231|gb|FM891950.1|FM891950 FM891950 Jatropha curcas emb... 448 e-126
>gi|237680303|gb|GO246487.1|GO246487 JcrME_RL0031 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 612
Score = 549 bits (277), Expect = e-157
Identities = 284/285 (99%), Gaps = 1/285 (0%)
Strand = Plus / Plus
Query: 1 ctccgccgcctccgcctccaccttatgaaggttatccaccaccacagccaccgtctggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ctccgccgcctccgcctccaccttatgaaggttatccaccaccacagccaccgtctggat 183
Query: 61 atcctggatatccaccacccaccaggaccgcgacagccatacgaaggttatcaaggctat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 atcctggatatccaccacc-accaggaccgcgacagccatacgaaggttatcaaggctat 242
Query: 121 ttcgctgaaggatatccaccacctccaccgcagcccggtcagccgcagtatcagcattat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ttcgctgaaggatatccaccacctccaccgcagcccggtcagccgcagtatcagcattat 302
Query: 181 cactgcgagcatcaccattatcaagataatgatggctgtacctcatttttgaggggatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 cactgcgagcatcaccattatcaagataatgatggctgtacctcatttttgaggggatgt 362
Query: 241 ttggctgcactttgttgctgttgtgtgctggaggaatgctgcttc 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttggctgcactttgttgctgttgtgtgctggaggaatgctgcttc 407
>gi|237680683|gb|GO246895.1|GO246895 JcrME_RL0439 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 631
Score = 521 bits (263), Expect = e-148
Identities = 284/287 (98%), Gaps = 3/287 (1%)
Strand = Plus / Minus
Query: 1 ctccgccgcctccgcctccaccttatgaagg-ttatccaccaccacagccaccgtctgga 59
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 513 ctccgccgcctccgcctccaccttatgaagggttatccaccaccacagccaccgtctgga 454
Query: 60 tatcctggatatccaccacccaccaggaccgcgacagccatacgaagg-ttatcaaggct 118
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 453 tatcctggatatccaccacc-accaggaccgcgacagccatacgaagggttatcaaggct 395
Query: 119 atttcgctgaaggatatccaccacctccaccgcagcccggtcagccgcagtatcagcatt 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atttcgctgaaggatatccaccacctccaccgcagcccggtcagccgcagtatcagcatt 335
Query: 179 atcactgcgagcatcaccattatcaagataatgatggctgtacctcatttttgaggggat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 atcactgcgagcatcaccattatcaagataatgatggctgtacctcatttttgaggggat 275
Query: 239 gtttggctgcactttgttgctgttgtgtgctggaggaatgctgcttc 285
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gtttggctgcactttgttgctgttgtgtgctggaggaatgctgcttc 228
>gi|237680721|gb|GO246872.1|GO246872 JcrME_RL0416 Expressed sequence
tags from Jatropha curcas root cDNA library Jatropha
curcas cDNA, mRNA sequence
Length = 629
Score = 458 bits (231), Expect = e-129
Identities = 255/259 (98%), Gaps = 3/259 (1%)
Strand = Plus / Minus
Query: 27 gaaggttatccaccaccacagccaccgtctggatatcctggatatccaccacccaccagg 86
||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct: 502 gaaggttatccaccaccacagccac-gtctg-atatcctggatatccaccacc-accagg 446
Query: 87 accgcgacagccatacgaaggttatcaaggctatttcgctgaaggatatccaccacctcc 146
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 accgcgacagccatacgaaggttatcaaagctatttcgctgaaggatatccaccacctcc 386
Query: 147 accgcagcccggtcagccgcagtatcagcattatcactgcgagcatcaccattatcaaga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accgcagcccggtcagccgcagtatcagcattatcactgcgagcatcaccattatcaaga 326
Query: 207 taatgatggctgtacctcatttttgaggggatgtttggctgcactttgttgctgttgtgt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taatgatggctgtacctcatttttgaggggatgtttggctgcactttgttgctgttgtgt 266
Query: 267 gctggaggaatgctgcttc 285
|||||||||||||||||||
Sbjct: 265 gctggaggaatgctgcttc 247
>gi|268521231|gb|FM891950.1|FM891950 FM891950 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002374,
mRNA sequence
Length = 593
Score = 448 bits (226), Expect = e-126
Identities = 233/234 (99%), Gaps = 1/234 (0%)
Strand = Plus / Plus
Query: 52 cgtctggatatcctggatatccaccacccaccaggaccgcgacagccatacgaaggttat 111
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 4 cgtctggatatcctggatatccaccacc-accaggaccgcgacagccatacgaaggttat 62
Query: 112 caaggctatttcgctgaaggatatccaccacctccaccgcagcccggtcagccgcagtat 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 caaggctatttcgctgaaggatatccaccacctccaccgcagcccggtcagccgcagtat 122
Query: 172 cagcattatcactgcgagcatcaccattatcaagataatgatggctgtacctcatttttg 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 cagcattatcactgcgagcatcaccattatcaagataatgatggctgtacctcatttttg 182
Query: 232 aggggatgtttggctgcactttgttgctgttgtgtgctggaggaatgctgcttc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 aggggatgtttggctgcactttgttgctgttgtgtgctggaggaatgctgcttc 236