Jatropha Genome Database

JcCB0059061.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0059061.20 + phase: 2 /pseudo/partial
         (269 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268519146|gb|FM887613.1|FM887613 FM887613 Jatropha curcas emb...   165   3e-41

>gi|268519146|gb|FM887613.1|FM887613 FM887613 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000847,
           mRNA sequence
          Length = 483

 Score =  165 bits (83), Expect = 3e-41
 Identities = 137/155 (88%)
 Strand = Plus / Plus

                                                                       
Query: 47  gaaagcaatcaaagagaagcgcttttacttgcatccatcaccggcaactacaccgagaga 106
           ||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||
Sbjct: 171 gaaagcaatcaaagagaagggcttttacttgcatccatcgccggcaaccacaccgagaga 230

                                                                       
Query: 107 agcggagccgaagttgctgccgctcttttctgtcacgttccctgtagtgtcaggttctgc 166
           ||| |||||   |||| ||||||||||| | ||||||| ||||  ||||||||||||| |
Sbjct: 231 agctgagccacggttgttgccgctctttccggtcacgtcccctagagtgtcaggttcttc 290

                                              
Query: 167 aaatccttcatctcgaacaaaagcctcttttattt 201
           ||||||||||||| ||| ||| || ||||||||||
Sbjct: 291 aaatccttcatcttgaataaatgcatcttttattt 325