Jatropha Genome Database
- JcCB0058851.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCB0058851.10 + phase: 0 /pseudo/partial
(804 letters)
Database: JAT_13201ests
13,201 sequences; 6,040,684 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|268521775|gb|FM894371.1|FM894371 FM894371 Jatropha curcas emb... 444 e-125
gi|268521420|gb|FM894172.1|FM894172 FM894172 Jatropha curcas emb... 333 2e-91
gi|268517366|gb|FM887308.1|FM887308 FM887308 Jatropha curcas emb... 256 3e-68
gi|268521128|gb|FM891847.1|FM891847 FM891847 Jatropha curcas emb... 178 6e-45
gi|268525375|gb|FM896017.1|FM896017 FM896017 Jatropha curcas emb... 94 3e-19
gi|262090943|gb|GT229301.1|GT229301 JC866 Jatropha seeds from fr... 78 2e-14
gi|268520057|gb|FM889905.1|FM889905 FM889905 Jatropha curcas emb... 62 1e-09
gi|262091357|gb|GT228784.1|GT228784 JC349 Jatropha seeds from fr... 50 4e-06
>gi|268521775|gb|FM894371.1|FM894371 FM894371 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004712,
mRNA sequence
Length = 724
Score = 444 bits (224), Expect = e-125
Identities = 266/272 (97%), Gaps = 6/272 (2%)
Strand = Plus / Plus
Query: 1 tgcacaactggatgagaaagcccttcttcccttttgcaccccctcaaatgagcgtcattg 60
|||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 456 tgcacaactggatgagaa-gcccttcttcccttt-gcacccc-tcaaatgagcgtcattg 512
Query: 61 ctcttcagtacagaaaaatgttgtttcggggtaacaaaagagggttctctgatgctatgg 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 513 ctcttcagtacagaaaaatgttgtttcggg-taacaaaagagggttctctgatgctatgg 571
Query: 121 atggggttctcagagggcaaatttctttctaatgcagaagtgaatgtgatgctatcaccc 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 atggg-ttctcagagggcaaatttctttctaatgcagaagtgaatgtgatgctatcaccc 630
Query: 181 agaccctctccaaacttgggattgaaacctggttctgtgcttgagaactttgggagtcaa 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 631 agaccctctccaaacttgggattg-aacctggttctgtgcttgagaactttgggagtcaa 689
Query: 241 gcagctaaagtgaaagacactgtcgccccaaa 272
||||||||||||||||||||||||||||||||
Sbjct: 690 gcagctaaagtgaaagacactgtcgccccaaa 721
>gi|268521420|gb|FM894172.1|FM894172 FM894172 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004362,
mRNA sequence
Length = 318
Score = 333 bits (168), Expect = 2e-91
Identities = 174/176 (98%)
Strand = Plus / Minus
Query: 565 aagatgttcagttgctttacaataggtcaatatggatctcatggaggtttgggaagagag 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aagatgttcagttgctttacaataggtcaatatggatctcatggaggtttgggaagagag 259
Query: 625 atgctgagtgagagcaagctgaaggatctgcttcatggctcagaatatgttcttacatat 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 atgctgagtgagagcaagctgaaggatctgcttcatggctcagaatatgttcttacatat 199
Query: 685 gaggataaagatggtgattggatgcttgttggagatgttccatgggaaatgttcat 740
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 198 gaggataaagatggtgattggatgcttgttggtgatgttccatgggagatgttcat 143
>gi|268517366|gb|FM887308.1|FM887308 FM887308 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_000478,
mRNA sequence
Length = 438
Score = 256 bits (129), Expect = 3e-68
Identities = 170/180 (94%), Gaps = 4/180 (2%)
Strand = Plus / Minus
Query: 565 aagatgttcagttgctttacaataggtcaatatggatctcatggaggtttgggaagagag 624
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 438 aagatgttcagttgctttacaataggtcgatatggatctcatggaggttgcggaagagag 379
Query: 625 a-tgctgagtgagagcaagctg-aaggatctgcttcatggctcagaatatgttcttacat 682
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 378 aatgctgagtgagagcaagctgtaaggatctgcttcatggctcagaatatgttcttacat 319
Query: 683 atgaggataaagatgg--tgattggatgcttgttggagatgttccatgggaaatgttcat 740
|||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 318 atgaggataaagatgggtcgattggatgcttgttggtgatgttccatgggagatgttcat 259
>gi|268521128|gb|FM891847.1|FM891847 FM891847 Jatropha curcas embryo
56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_002241,
mRNA sequence
Length = 282
Score = 178 bits (90), Expect = 6e-45
Identities = 96/98 (97%)
Strand = Plus / Plus
Query: 643 ctgaaggatctgcttcatggctcagaatatgttcttacatatgaggataaagatggtgat 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ctgaaggatctgcttcatggctcagaatatgttcttacatatgaggataaagatggtgat 70
Query: 703 tggatgcttgttggagatgttccatgggaaatgttcat 740
|||||||||||||| |||||||||||||| ||||||||
Sbjct: 71 tggatgcttgttggtgatgttccatgggagatgttcat 108
>gi|268525375|gb|FM896017.1|FM896017 FM896017 Jatropha curcas embryo
71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003146,
mRNA sequence
Length = 569
Score = 93.7 bits (47), Expect = 3e-19
Identities = 56/59 (94%)
Strand = Plus / Minus
Query: 682 tatgaggataaagatggtgattggatgcttgttggagatgttccatgggaaatgttcat 740
|||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 569 tatgaggataaagatgttgattggatgcttgttggtgatgttccatgggagatgttcat 511
>gi|262090943|gb|GT229301.1|GT229301 JC866 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone PL21SE.F09.scf 5', mRNA sequence
Length = 465
Score = 77.8 bits (39), Expect = 2e-14
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 659 atggctcagaatatgttcttacatatgaggataaagatggtgattggatgcttgttggag 718
|||| ||||| ||||| || ||||| |||||||| ||||| ||||||||||||||||| |
Sbjct: 421 atggatcagagtatgtgctaacatacgaggataaggatggcgattggatgcttgttgggg 362
Query: 719 atgttccatgggaaatgtt 737
|||| |||||||| |||||
Sbjct: 361 atgtgccatgggagatgtt 343
>gi|268520057|gb|FM889905.1|FM889905 FM889905 Jatropha curcas embryo
35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003658,
mRNA sequence
Length = 551
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 667 gaatatgttcttacatatgaggataaagatggtgattggatgcttgttggagatgttcca 726
|||||||| | ||| |||||||| |||||||| ||||||||| | ||||||||||| |||
Sbjct: 376 gaatatgtgcctacttatgaggacaaagatggagattggatgatggttggagatgtacca 317
Query: 727 tgg 729
|||
Sbjct: 316 tgg 314
>gi|262091357|gb|GT228784.1|GT228784 JC349 Jatropha seeds from
fruits at three stages of maturation Jatropha curcas
cDNA clone PL07SE.G03.scf 5', mRNA sequence
Length = 270
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 682 tatgaggataaagatggtgattggatgcttgttggagatgt 722
|||||||| |||||||| ||||||||| | |||||||||||
Sbjct: 229 tatgaggacaaagatggagattggatgatggttggagatgt 269