Jatropha Genome Database

JcCB0054381.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0054381.10 + phase: 0 
         (813 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237679862|gb|GO247167.1|GO247167 JcrME_RL0711 Expressed seque...    68   2e-11

>gi|237679862|gb|GO247167.1|GO247167 JcrME_RL0711 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 619

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 88/106 (83%)
 Strand = Plus / Plus

                                                                       
Query: 655 tttccttccttaaaatggcttccttcagtcaagagggaaaaatctagagttatgaaattg 714
           ||||||||| || ||||||||||| | | ||||||||||| ||| ||| ||  |||||||
Sbjct: 104 tttccttccctacaatggcttcctactgccaagagggaaagatcaagaatttggaaattg 163

                                                         
Query: 715 cattatgaaacagataagatcctggaagatatcttacaagagcata 760
           ||  |  | |||||| |||| || ||||||||||||||||||||||
Sbjct: 164 caccaaaatacagatgagattctcgaagatatcttacaagagcata 209



 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 562 aatgctgttggtcataaaaccaaaaatcaagaaacgttgtta 603
           ||||||||||||||||||| |||||| |||||  ||||||||
Sbjct: 8   aatgctgttggtcataaaagcaaaaaccaagaggcgttgtta 49