Jatropha Genome Database

JcCB0053361.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0053361.10 + phase: 2 /partial/short
         (118 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268524676|gb|FM895374.1|FM895374 FM895374 Jatropha curcas emb...    84   4e-17
gi|268518415|gb|FM888689.1|FM888689 FM888689 Jatropha curcas emb...    66   9e-12

>gi|268524676|gb|FM895374.1|FM895374 FM895374 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002182,
           mRNA sequence
          Length = 164

 Score = 83.8 bits (42), Expect = 4e-17
 Identities = 60/66 (90%)
 Strand = Plus / Minus

                                                                       
Query: 14  ggcaccgcgtcaggctggcttcacagagcagcgataacctctcactcctggcagtggaag 73
           ||||| |||||||||||| |||||||||||||||| || || | ||||||||||||||||
Sbjct: 142 ggcactgcgtcaggctggtttcacagagcagcgatcacatcccgctcctggcagtggaag 83

                 
Query: 74  gataac 79
           ||||||
Sbjct: 82  gataac 77


>gi|268518415|gb|FM888689.1|FM888689 FM888689 Jatropha curcas
          embryo 35-55 (DAF) Jatropha curcas cDNA clone
          rjcfea0_002147, mRNA sequence
          Length = 231

 Score = 65.9 bits (33), Expect = 9e-12
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                               
Query: 11 gagggcaccgcgtcaggctggcttcacagagcagcga 47
          ||||||||||||||||||||| |||||||||||||||
Sbjct: 40 gagggcaccgcgtcaggctggtttcacagagcagcga 4