Jatropha Genome Database

JcCB0052901.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0052901.10 + phase: 0 /pseudo/partial
         (886 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268517453|gb|FM889171.1|FM889171 FM889171 Jatropha curcas emb...   785   0.0  

>gi|268517453|gb|FM889171.1|FM889171 FM889171 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002760,
           mRNA sequence
          Length = 637

 Score =  785 bits (396), Expect = 0.0
 Identities = 412/416 (99%), Gaps = 1/416 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcgaagaatgtaggaattctcgctatggacatctacttccctcctacctgtgttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 atggcgaagaatgtaggaattctcgctatggacatctacttccctcctacctgtgttcag 281

                                                                       
Query: 61  caggaagcactagaggctcatgacggcgcaagtaaaggaaaatataccgttggacttgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 caggaagcactagaggctcatgacggcgcaagtaaaggaaaatataccgttggacttgga 341

                                                                       
Query: 121 caagattgcatggcattttgttctgaagtggaagatgtcatctcgatgagtttgacagct 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 342 caagattgcatggcattttgttcagaagtggaagatgtcatctcgatgagtttgacagct 401

                                                                       
Query: 181 gtttcttcactccttgagaagtataatattgatcctaaacaaattggtcgtctggaagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gtttcttcactccttgagaagtataatattgatcctaaacaaattggtcgtctggaagtt 461

                                                                       
Query: 241 ggcagtgaaactgtgattgacaagagcaaatctatcaagaccttcttgatgcaaattttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggcagtgaaactgtgattgacaagagcaaatctatcaagaccttcttgatgcaaattttt 521

                                                                       
Query: 301 gagaaatatggaaacactgatgttgaaggtgttga-ctcaactaatgcctgttatggggg 359
           ||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||
Sbjct: 522 gagaaatatggaaacactgatgtcgaaggtgttgacctcaactaatgcctgtcatggggg 581

                                                                   
Query: 360 gacagcagctttactcaactgtgtcaactgggttgagagcaactcatgggatggac 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gacagcagctttactcaactgtgtcaactgggttgagagcaactcatgggatggac 637