Jatropha Genome Database

JcCB0050341.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0050341.10 - phase: 0 /partial
         (1137 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268526426|gb|FM895280.1|FM895280 FM895280 Jatropha curcas emb...   737   0.0  

>gi|268526426|gb|FM895280.1|FM895280 FM895280 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002080,
           mRNA sequence
          Length = 507

 Score =  737 bits (372), Expect = 0.0
 Identities = 427/444 (96%), Gaps = 1/444 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaatccactacggaagctctttcgaagcttaacatcaatggcgattttgcgtcctcc 60
           |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| 
Sbjct: 64  atggaatccactactgaagctctttcaaagcttaacatcaatggcgattttgcatcctcg 123

                                                                       
Query: 61  gtccctaatttacataaaaaccttcaccttctcccccctgagcagattgagctggcgaaa 120
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 124 ttccctaatttacataaaaaccttcaccttctcccccctgagcagattgaactggcgaaa 183

                                                                       
Query: 121 atattagtagaaatggggcagagtcatctgtttgagcattggccagaacctggcgttgat 180
           |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 184 atattactagaaatggggcagagtcatctgtttgagcattggccataacctggcgttgat 243

                                                                       
Query: 181 gatgaggagaagaaagctttgttcgatcaggtggctcgcctcaattccagctaccctgga 240
           ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 244 gatgaagagaagaaagctttgttcgatcaggtggctcgcctctattccagctaccctgga 303

                                                                       
Query: 241 ggtttggcatcatatattaaaacagcaagagaactgttggccgattcaaaagcaggaaag 300
           ||||||||||||||||||| |||||||||||||||||||||||||||| | |||||| ||
Sbjct: 304 ggtttggcatcatatattagaacagcaagagaactgttggccgattcatatgcaggagag 363

                                                                       
Query: 301 aacccctttgatggctttacaccgtctgttccaacaggagaaaatttaacttttggtgac 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 364 aacccctttgatggctttacaccgtctgttccagcaggagaaaatttaacttttggtgac 423

                                                                       
Query: 361 gaaaactttgtcaaatttgaggag-gcaggagttagagaagcccagaatgctgcatttgt 419
           |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 424 gaaaactttgtcaaatttgaggagtgcaggagttagagaagcccataatgctgcatttgt 483

                                   
Query: 420 gcttgttgcaggtggtcttggcga 443
           ||||||||||||||||||||||||
Sbjct: 484 gcttgttgcaggtggtcttggcga 507