Jatropha Genome Database

JcCB0044641.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0044641.10 + phase: 0 /partial
         (1828 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518158|gb|FM888432.1|FM888432 FM888432 Jatropha curcas emb...   351   2e-96
gi|262091218|gb|GT228645.1|GT228645 JC210 Jatropha seeds from fr...    66   2e-10

>gi|268518158|gb|FM888432.1|FM888432 FM888432 Jatropha curcas embryo
            35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001848,
            mRNA sequence
          Length = 538

 Score =  351 bits (177), Expect = 2e-96
 Identities = 180/181 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1269 gctaacacgagatgcagagtgggaaacatgtgcccctgtagcagacacttcttggaagca 1328
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 358  gctaacacgagatgcagagtgagaaacatgtgcccctgtagcagacacttcttggaagca 417

                                                                        
Query: 1329 gattgcagaacctgtgatgcagctttatactgaaacaactgatggttccactattgagga 1388
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418  gattgcagaacctgtgatgcagctttatactgaaacaactgatggttccactattgagga 477

                                                                        
Query: 1389 caaggaaactgcactagtgtggtgctatgaggatgcagatccggactttggttcatgcca 1448
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478  caaggaaactgcactagtgtggtgctatgaggatgcagatccggactttggttcatgcca 537

             
Query: 1449 a 1449
            |
Sbjct: 538  a 538


>gi|262091218|gb|GT228645.1|GT228645 JC210 Jatropha seeds from fruits
            at three stages of maturation Jatropha curcas cDNA clone
            PL03SE.E01.scf 5', mRNA sequence
          Length = 492

 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                 
Query: 1609 gattttgttttgtgcattggagatgaccggtccgatgaagatatgttcgaggt 1661
            ||||||||| | |||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 443  gattttgttctctgcattggagatgaccggtcagatgaagacatgtttgaggt 391