Jatropha Genome Database

JcCB0041131.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0041131.10 + phase: 0 /pseudo
         (703 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268524798|gb|FM895496.1|FM895496 FM895496 Jatropha curcas emb...   103   3e-22
gi|268517120|gb|FM892672.1|FM892672 FM892672 Jatropha curcas emb...    70   4e-12

>gi|268524798|gb|FM895496.1|FM895496 FM895496 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002427,
           mRNA sequence
          Length = 519

 Score =  103 bits (52), Expect = 3e-22
 Identities = 65/68 (95%), Gaps = 1/68 (1%)
 Strand = Plus / Minus

                                                                       
Query: 411 tgagagtaaggatttgggcattgaggcttcgtttggggaaaatgttttggacattgaagg 470
           |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 519 tgagagtagggatttgggcattgaggcttcgtttgggg-aaatgtttcggacattgaagg 461

                   
Query: 471 tagagaga 478
           ||||||||
Sbjct: 460 tagagaga 453


>gi|268517120|gb|FM892672.1|FM892672 FM892672 Jatropha curcas embryo
           56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003280,
           mRNA sequence
          Length = 562

 Score = 69.9 bits (35), Expect = 4e-12
 Identities = 38/39 (97%)
 Strand = Plus / Minus

                                                  
Query: 648 agctgaagaagagcagcagagacaatttattgagaagta 686
           ||||||||||||||||||||||| |||||||||||||||
Sbjct: 562 agctgaagaagagcagcagagactatttattgagaagta 524