Jatropha Genome Database

JcCB0040361.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0040361.20 + phase: 2 /partial
         (1069 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237679862|gb|GO247167.1|GO247167 JcrME_RL0711 Expressed seque...    52   1e-06
gi|237680502|gb|GO246714.1|GO246714 JcrME_RL0258 Expressed seque...    52   1e-06

>gi|237679862|gb|GO247167.1|GO247167 JcrME_RL0711 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 619

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 612 taaaattagttattaaagaaactttgagattacatcct 649
           |||| ||| ||||||||||||| |||||||||||||||
Sbjct: 516 taaagttaattattaaagaaacattgagattacatcct 553


>gi|237680502|gb|GO246714.1|GO246714 JcrME_RL0258 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 700

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 592 atttgatgaattgaagtacctaaaattagttattaaagaaactttgagattacatcct 649
           |||||| ||||| || ||||| ||| ||||| | || |||||||||||||||||||||
Sbjct: 81  atttgaggaattaaaatacctgaaactagttgtgaaggaaactttgagattacatcct 138