Jatropha Genome Database

JcCB0040361.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0040361.10 + phase: 0 
         (498 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268519357|gb|FM887824.1|FM887824 FM887824 Jatropha curcas emb...   153   2e-37
gi|237680809|gb|GO247021.1|GO247021 JcrME_RL0565 Expressed seque...    60   2e-09

>gi|268519357|gb|FM887824.1|FM887824 FM887824 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001096,
           mRNA sequence
          Length = 320

 Score =  153 bits (77), Expect = 2e-37
 Identities = 128/145 (88%)
 Strand = Plus / Plus

                                                                       
Query: 350 tttgcaagcgcagtggcaaggcctatattattgatggtgttgaggtgaaagaagatgaaa 409
           |||||||||| ||  | |||||||||| | |||||||||||||||| |||||||||||||
Sbjct: 3   tttgcaagcgaagctgtaaggcctatactgttgatggtgttgaggttaaagaagatgaaa 62

                                                                       
Query: 410 ttagggctgacctagaacatactacacaagtcttctttggaacactcaagctttatgaag 469
           |||||| |  ||||||| | ||||  |||||||| |||||| || |||||||||||||||
Sbjct: 63  ttaggggtagcctagaaaagactatgcaagtcttttttggatcattcaagctttatgaag 122

                                    
Query: 470 cctatgccttggcaaatcctgatgc 494
           |||||||||||||||||||||||||
Sbjct: 123 cctatgccttggcaaatcctgatgc 147


>gi|237680809|gb|GO247021.1|GO247021 JcrME_RL0565 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 674

 Score = 60.0 bits (30), Expect = 2e-09
 Identities = 123/154 (79%)
 Strand = Plus / Plus

                                                                       
Query: 125 ttgtcaatcttcaaggagatgggggacccggtactctcaggcaaatcaccttcgttcaag 184
           ||||| ||||| ||||| |||| || || ||||||||||| |||||||  ||     |||
Sbjct: 199 ttgtccatcttgaaggaaatggaggtcctggtactctcagacaaatcaattttagcaaag 258

                                                                       
Query: 185 gtggcccagtaagttatgtgaaggagacagttgacgttgtagataaggaaaatttcatat 244
           || ||||| | | ||||||||||||||| ||||| |   ||||||| |||||||||||||
Sbjct: 259 gtagcccattgacttatgtgaaggagactgttgatgcgatagataaagaaaatttcatat 318

                                             
Query: 245 ttgactacactataattggaggcgatcctgctct 278
           |||| ||  |  || ||| |||||||||||||||
Sbjct: 319 ttgaatattcagtagttgaaggcgatcctgctct 352