Jatropha Genome Database

JcCB0031871.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0031871.20 + phase: 0 /pseudo
         (619 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268518222|gb|FM888496.1|FM888496 FM888496 Jatropha curcas emb...   543   e-155

>gi|268518222|gb|FM888496.1|FM888496 FM888496 Jatropha curcas embryo
           35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001922,
           mRNA sequence
          Length = 579

 Score =  543 bits (274), Expect = e-155
 Identities = 274/274 (100%)
 Strand = Plus / Plus

                                                                       
Query: 346 agcttttggagtccaatttgaaacacactatacaagtggaaggattgtccgacactttgt 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 agcttttggagtccaatttgaaacacactatacaagtggaaggattgtccgacactttgt 312

                                                                       
Query: 406 tccaattggcaagattttgaaacctgtgctgctagaatgcgtgactcctataacttgtta 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tccaattggcaagattttgaaacctgtgctgctagaatgcgtgactcctataacttgtta 372

                                                                       
Query: 466 ctggagcctatctttgattttgcatggggaaggagaactaatgttggtatttaaggaatt 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctggagcctatctttgattttgcatggggaaggagaactaatgttggtatttaaggaatt 432

                                                                       
Query: 526 gtatccacctgtgaagatgttggtccctatctggaaggccttgtgtagtgccactggcaa 585
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtatccacctgtgaagatgttggtccctatctggaaggccttgtgtagtgccactggcaa 492

                                             
Query: 586 tgaagaaagctcagtcacatctacagaagatggt 619
           ||||||||||||||||||||||||||||||||||
Sbjct: 493 tgaagaaagctcagtcacatctacagaagatggt 526



 Score =  335 bits (169), Expect = 4e-92
 Identities = 169/169 (100%)
 Strand = Plus / Plus

                                                                       
Query: 9   tttgtccattactgatcgaagatatacttacattcatgactgtaaatggccttccgaagc 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tttgtccattactgatcgaagatatacttacattcatgactgtaaatggccttccgaagc 60

                                                                       
Query: 69  aattgacgtgcaccatattgtagttcggaagagcaaaacgaagagtttctttgtatacct 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aattgacgtgcaccatattgtagttcggaagagcaaaacgaagagtttctttgtatacct 120

                                                            
Query: 129 ctccgcttttgttcttttaccaaacgccttatgtctctttctagtcaag 177
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctccgcttttgttcttttaccaaacgccttatgtctctttctagtcaag 169



 Score =  172 bits (87), Expect = 3e-43
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                       
Query: 219 aggacatatcaatcaacattctcttctggagcttcattttaagtgcaatccttgtcaaat 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 aggacatatcaatcaacattctcttctggagcttcattttaagtgcaatccttgtcaaat 227

                                      
Query: 279 tgattatttggaagcctgttgtaaaag 305
           |||||||||||||||||||||||||||
Sbjct: 228 tgattatttggaagcctgttgtaaaag 254