Jatropha Genome Database

JcCB0030711.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0030711.30 + phase: 0 /partial
         (795 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|268524672|gb|FM895370.1|FM895370 FM895370 Jatropha curcas emb...   668   0.0  

>gi|268524672|gb|FM895370.1|FM895370 FM895370 Jatropha curcas embryo
           71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002178,
           mRNA sequence
          Length = 459

 Score =  668 bits (337), Expect = 0.0
 Identities = 424/441 (96%), Gaps = 9/441 (2%)
 Strand = Plus / Plus

                                                                       
Query: 81  tgctaccttaaacaaccaatttctcc-aagtcaacaaaaacaagagcaagaatcccttca 139
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 19  tgctaccttaaacaaccaatttctccgaagtcaacaaaaacaagagcaagaatcccttca 78

                                                                       
Query: 140 attcttacaaattgact-ccact-ttggcgtcaaagccattgtccagccttccctcagtg 197
           ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 79  attcttacaaattgactaccactattggcgtcaaagccattgtccagccttccctcagtg 138

                                                                       
Query: 198 tgctcgtaaatccgcagcttcatcatcttcttcttctgttgctgttgagtctgagaaaga 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 tgctcgtaaatccgcagcttcatcatcttcttcttctgttgctgttgagtctgagaaaga 198

                                                                       
Query: 258 ccggcttccag-ctgatattagagtcacagagaccgtggagcccaattcaagattgaggt 316
           |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ccggctaccagactgatattagagtcacagagaccgtggagcccaattcaagattgaggt 258

                                                                       
Query: 317 tgactgtagaagtcccagaagctgtatgcgatgattgttacagcag-ggtcatgaatgag 375
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 259 tgactgtagaagtcccagaagctgtatgcgatgattgttacagcagtgctcatgaatgag 318

                                                                       
Query: 376 ttcatgaagcaagctagggtaccgggttttcgtcctggaaagaatgttccagaaagtatt 435
           ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 319 ttcatgaagcaagctagggtaccgggtcttcgtcctggaaagaatgtaccagaaagtatt 378

                                                                       
Query: 436 ct-tct-aagttatgttggaaaggaaaatgttcagaaggct-acaattgaatct-gtttt 491
           || ||| |||||||||||||||||||||||| ||||||||| |||||||||||| ||   
Sbjct: 379 ctatctaaagttatgttggaaaggaaaatgtacagaaggctaacaattgaatctagtaaa 438

                                
Query: 492 gaagaggacacttccacatgc 512
           |||||||||||||||||||||
Sbjct: 439 gaagaggacacttccacatgc 459