Jatropha Genome Database

JcCB0029801.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCB0029801.10 + phase: 2 /partial
         (379 letters)

Database: JAT_13201ests 
           13,201 sequences; 6,040,684 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|237680720|gb|GO246871.1|GO246871 JcrME_RL0415 Expressed seque...   337   5e-93

>gi|237680720|gb|GO246871.1|GO246871 JcrME_RL0415 Expressed sequence
           tags from Jatropha curcas root cDNA library Jatropha
           curcas cDNA, mRNA sequence
          Length = 581

 Score =  337 bits (170), Expect = 5e-93
 Identities = 202/210 (96%), Gaps = 2/210 (0%)
 Strand = Plus / Plus

                                                                       
Query: 171 tttttgataagattgaggtgaatgggaaaaactctgcacccctctacaag-tacctaaaa 229
           ||||||||||  ||||||||||||||||||| ||||| |||||||||||  |||||||||
Sbjct: 70  tttttgataattttgaggtgaatgggaaaaattctgcgcccctctacaaaatacctaaaa 129

                                                                       
Query: 230 tctgaaaagggtgggatttttggagatgccataaagtggaatttcaccaaatttttagtg 289
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 130 tctgaaaagggtgggatttttggagatgccataaagtgcaatttcaccaaatttttagtg 189

                                                                       
Query: 290 aacaaggaggggaagaccgtggagcgatatgctcctactacatctccccttaaaattgag 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 aacaaggaggggaagaccgtggagcgatatgctcctactacatctccccttaaaattgag 249

                                         
Query: 350 aaggacatacagaatctgttgggatcttct 379
           ||||||||| ||||||||||||||||||||
Sbjct: 250 aaggacata-agaatctgttgggatcttct 278